View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2552_low_31 (Length: 286)

Name: NF2552_low_31
Description: NF2552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2552_low_31
NF2552_low_31
[»] chr6 (6 HSPs)
chr6 (36-275)||(1192733-1192973)
chr6 (36-263)||(1181821-1182045)
chr6 (36-259)||(896621-896852)
chr6 (34-232)||(1187074-1187269)
chr6 (34-222)||(1197314-1197502)
chr6 (12-62)||(887862-887912)
[»] chr4 (2 HSPs)
chr4 (36-275)||(10203208-10203447)
chr4 (34-217)||(49611785-49611968)
[»] chr8 (8 HSPs)
chr8 (44-133)||(5171560-5171649)
chr8 (47-208)||(5195020-5195180)
chr8 (47-208)||(1795823-1795983)
chr8 (51-208)||(5177584-5177740)
chr8 (51-208)||(5198910-5199066)
chr8 (51-133)||(5185100-5185182)
chr8 (44-112)||(5207113-5207181)
chr8 (66-133)||(6231610-6231677)
[»] chr7 (3 HSPs)
chr7 (51-133)||(5178792-5178874)
chr7 (44-212)||(8306652-8306820)
chr7 (159-230)||(8551885-8551956)
[»] chr5 (1 HSPs)
chr5 (47-103)||(14878124-14878180)


Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 36 - 275
Target Start/End: Complemental strand, 1192973 - 1192733
Alignment:
Q  36 ttaaaacaaacattctcatcaatcttcttagagcttatgactttcacatccttcaagccatgccaccaacacttagtttcagcagaaatgcaaaagcaat 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1192973 ttaaaacaaacattctcatcaatcttcttagagcttatgactttcacatccttcaagccatgccaccaacacttagtttcagcagaaatgcaaaagcaat 1192874  T
Q  136 tgttctcnnnnnnncccattagcgtctcatagaaaaactgtagttttagatgattaac-aaaatagagttagaactcacaagccacacataacattaatt 234  Q
    |||||||       ||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  1192873 tgttctctttttttcccattagcgtctcatacaaaaactgtagttttagatgataaacaaaaatagagttagaactcacaagccacacataacattaatt 1192774  T
Q  235 ataaatattttgtagttaaatgcacttttgccccttttcat 275  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  1192773 ataaatattttttagttaaatgcacttttgccccttttcat 1192733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 36 - 263
Target Start/End: Complemental strand, 1182045 - 1181821
Alignment:
Q  36 ttaaaacaaacattctcatcaatcttcttagagcttatgactttcacatccttcaagccatgccaccaacacttagtttcagcagaaatgcaaaagcaat 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  1182045 ttaaaacaaacattctcatcaatcttcttagagcttatgactttcacatccttcaagtcatgccaccaacacttaatttcagcagaaatgcaaaagcaat 1181946  T
Q  136 tgttctcnnnnnnncccattagcgtctcatagaaaaactgtagttttagatgattaacaaaatagagttagaactcacaagccacacataacattaatta 235  Q
     |   ||       | |||||||||||||||||||| ||| ||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||    
T  1181945 cg---tctttttttctcattagcgtctcatagaaaatctgcagttttagatgataaacaaaatagagtcagaactcacaagccacatataacattaatta 1181849  T
Q  236 taaatattttgtagttaaatgcactttt 263  Q
    |||| |||||| ||| ||||||||||||    
T  1181848 taaacattttggagtaaaatgcactttt 1181821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 36 - 259
Target Start/End: Complemental strand, 896852 - 896621
Alignment:
Q  36 ttaaaacaaacattctcatcaatcttcttagagcttatgactttcacatccttcaagccatgccaccaacacttagtttcagcagaaa---tgcaaaagc 132  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||    
T  896852 ttaaaacaaacattctcatcaatctccttagagcttatgactttcacatccttcaagccatgccaccaacacttagtttcagcagaaatgctgcaaaagc 896753  T
Q  133 aattgttctcnnnnnnncccattagcgtctcatagaaaaactgtagttttagatgattaacaaaatagagt--tagaactcacaagccac-----acata 225  Q
    ||| |||||        |||||||||||||||||||||||||||||||||||||||| |||||||||||||  || ||||||||||| ||     |||||    
T  896752 aatcgttct--ttttttcccattagcgtctcatagaaaaactgtagttttagatgataaacaaaatagagttatacaactcacaagctacacataacata 896655  T
Q  226 acattaattataaatattttgtagttaaatgcac 259  Q
    ||||||||||||||||||||| ||||||||||||    
T  896654 acattaattataaatattttggagttaaatgcac 896621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 34 - 232
Target Start/End: Complemental strand, 1187269 - 1187074
Alignment:
Q  34 tcttaaaacaaacattctcatcaatcttcttagagcttatgactttcacatccttcaagccatgccaccaacacttagtttcagcagaaatgcaaaagca 133  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| || | || |||||||||||||||    
T  1187269 tcttaaaacaaacattctcatcaatcttcatagagcttgtgactttcacatccttcaagccatgccaccaacacttcgtattagaagaaatgcaaaagca 1187170  T
Q  134 attgttctcnnnnnnncccattagcgtctcatagaaaaactgtagttttagatgattaacaaaatagagttagaactcacaagccacacataacattaa 232  Q
    || |    |       | ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||| |||| ||||| ||||||||    
T  1187169 atcg---cctttttttctcattagcgtctcatagaaaaattgtagttttagatgataaacaaaatagagttagaagtcataagctacacaaaacattaa 1187074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 34 - 222
Target Start/End: Complemental strand, 1197502 - 1197314
Alignment:
Q  34 tcttaaaacaaacattctcatcaatcttcttagagcttatgactttcacatccttcaagccatgccaccaacacttagtttcagcagaaatgcaaaagca 133  Q
    ||||||||  |||||||||||| |||||| ||| |||  |||||||||||||||||||| |||||||||||||||| || ||| ||||| ||||||||||    
T  1197502 tcttaaaatcaacattctcatcgatcttcatagtgctcgtgactttcacatccttcaagtcatgccaccaacactttgtatcatcagaactgcaaaagca 1197403  T
Q  134 attgttctcnnnnnnncccattagcgtctcatagaaaaactgtagttttagatgattaacaaaatagagttagaactcacaagccacac 222  Q
     | |||||        | ||||| ||||||||||||||||||||||| | || |||||||||||||||||||||| ||| |||| ||||    
T  1197402 gtcgttctttttttttctcattaacgtctcatagaaaaactgtagttatcgacgattaacaaaatagagttagaagtcaaaagctacac 1197314  T

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Target: chr6; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 887862 - 887912
Alignment:
Q  12 ataggatcacaaagttcatgaatcttaaaacaaacattctcatcaatcttc 62  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  887862 ataggatcacaaagttcatgaatcttaaaacaaacattctcatcaatcttc 887912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 36 - 275
Target Start/End: Complemental strand, 10203447 - 10203208
Alignment:
Q  36 ttaaaacaaacattctcatcaatcttcttagagcttatgactttcacatccttcaagccatgccaccaacacttagtttcagcagaaatgcaaaagcaat 135  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10203447 ttaaaacaaacattctcatcaatcttcttagagcttatgactttcacatccttcaagccatgccaccaacacttagtttcagtagaaatgcaaaagcaat 10203348  T
Q  136 tgttctcnnnnnnncccattagcgtctcatagaaaaactgtagttttagatgattaacaaaatagagttagaactcacaagccacacataacattaatta 235  Q
     ||||||       ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||    
T  10203347 cgttctctttttttcccattagcgtctcataaaaaaactgtagttttagatgataaacaaaatagagttagaactcacaagccacagaaaacattaatta 10203248  T
Q  236 taaatattttgtagttaaatgcacttttgccccttttcat 275  Q
    |||| |||||| || ||||||||||||| |||||||||||    
T  10203247 taaacattttggagataaatgcacttttaccccttttcat 10203208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 34 - 217
Target Start/End: Complemental strand, 49611968 - 49611785
Alignment:
Q  34 tcttaaaacaaacattctcatcaatcttcttagagcttatgactttcacatccttcaagccatgccaccaacacttagtttcagcagaaatgcaaaagca 133  Q
    ||||||||  ||||||||||||||| ||||| ||  ||  |||||||| ||||||||||||||||||||||||||| || |||  ||||  ||||| |||    
T  49611968 tcttaaaatcaacattctcatcaattttctttgaagttgagactttcaaatccttcaagccatgccaccaacacttggtatcactagaaccgcaaacgca 49611869  T
Q  134 attgttctcnnnnnnncccattagcgtctcatagaaaaactgtagttttagatgattaacaaaatagagttagaactcacaagc 217  Q
    || ||  ||       | |||||| ||||| |||||||||||||||||| ||  |||||||||||| ||||| |||||| ||||    
T  49611868 atcgtcgtcttttcttctcattagtgtctcgtagaaaaactgtagttttggacaattaacaaaatatagttataactcagaagc 49611785  T

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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 44 - 133
Target Start/End: Complemental strand, 5171649 - 5171560
Alignment:
Q  44 aacattctcatcaatcttcttagagcttatgactttcacatccttcaagccatgccaccaacacttagtttcagcagaaatgcaaaagca 133  Q
    ||||||||| ||||||||| |||||||| | ||||||||||||||||||||||||||||||||||| || |||  |||||||||||||||    
T  5171649 aacattctcgtcaatcttcatagagcttgtaactttcacatccttcaagccatgccaccaacacttggtatcacaagaaatgcaaaagca 5171560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 47 - 208
Target Start/End: Complemental strand, 5195180 - 5195020
Alignment:
Q  47 attctcatcaatcttcttagagcttatgactttcacatccttcaagccatgccaccaacacttagtttcagcagaaatgcaaaagcaattgttctcnnnn 146  Q
    ||||||||||||||||   ||||||||||||||||||| ||||||||||||||||||||||||||| |||  |||| |||||||||| |  | | |        
T  5195180 attctcatcaatcttcaccgagcttatgactttcacattcttcaagccatgccaccaacacttagtatcactagaactgcaaaagcagtcatcccccttt 5195081  T
Q  147 nnncccattagcgtctcatagaaaaactgtagttttagatgattaacaaaatagagttagaa 208  Q
        |||||||||||||||| || ||||| || || ||||||||||| ||||||||||||||    
T  5195080 ctttccattagcgtctcatataagaactgcagattcagatgattaac-aaatagagttagaa 5195020  T

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Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 47 - 208
Target Start/End: Original strand, 1795823 - 1795983
Alignment:
Q  47 attctcatcaatcttcttagagcttatgactttcacatccttcaagccatgccaccaacacttagtttcagcagaaatgcaaaagcaattgttctcnnnn 146  Q
    ||||||||||||||||   ||||||||||||||||||| ||||||||||||||||||||||||||| |||  |||| |||| ||||| |  | | |        
T  1795823 attctcatcaatcttcaccgagcttatgactttcacattcttcaagccatgccaccaacacttagtatcactagaactgcacaagcagtcatcccctttt 1795922  T
Q  147 nnncccattagcgtctcatagaaaaactgtagttttagatgattaacaaaatagagttagaa 208  Q
        |||||||||||||||| |||| ||| || || ||||||||||| ||||||||||||||    
T  1795923 ctttccattagcgtctcatataaaagctgcagattgagatgattaac-aaatagagttagaa 1795983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 51 - 208
Target Start/End: Complemental strand, 5177740 - 5177584
Alignment:
Q  51 tcatcaatcttcttagagcttatgactttcacatccttcaagccatgccaccaacacttagtttcagcagaaatgcaaaagcaattgttctcnnnnnnnc 150  Q
    ||||||||||||   ||||||||||||||||||| ||||||||||||||||||||||||||| |||  |||| |||| ||||| |  | | |            
T  5177740 tcatcaatcttcactgagcttatgactttcacattcttcaagccatgccaccaacacttagtatcactagaactgcacaagcagtcatccccctttcttt 5177641  T
Q  151 ccattagcgtctcatagaaaaactgtagttttagatgattaacaaaatagagttagaa 208  Q
    |||||||||||||||| |||||||| || || ||||||||||| ||||||||||||||    
T  5177640 ccattagcgtctcatataaaaactgcagattcagatgattaac-aaatagagttagaa 5177584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 51 - 208
Target Start/End: Original strand, 5198910 - 5199066
Alignment:
Q  51 tcatcaatcttcttagagcttatgactttcacatccttcaagccatgccaccaacacttagtttcagcagaaatgcaaaagcaattgttctcnnnnnnnc 150  Q
    ||||||||||||   ||||||||||||||||||| ||||||||||||||||||||||||||| |||  |||| |||||||||| |  | | |            
T  5198910 tcatcaatcttcaccgagcttatgactttcacattcttcaagccatgccaccaacacttagtatcactagaactgcaaaagcagtcatccccctttcttt 5199009  T
Q  151 ccattagcgtctcatagaaaaactgtagttttagatgattaacaaaatagagttagaa 208  Q
    |||||||||||||||| |||||||| |  ||||||| |||||| ||||||||||||||    
T  5199010 ccattagcgtctcatataaaaactgcatatttagattattaac-aaatagagttagaa 5199066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 51 - 133
Target Start/End: Complemental strand, 5185182 - 5185100
Alignment:
Q  51 tcatcaatcttcttagagcttatgactttcacatccttcaagccatgccaccaacacttagtttcagcagaaatgcaaaagca 133  Q
    |||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||| |||  |||| |||| |||||    
T  5185182 tcatcaatcttcattgagcttatgactttcacattcttcaagccatgccaccaacacttagtatcactagaactgcacaagca 5185100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 5207181 - 5207113
Alignment:
Q  44 aacattctcatcaatcttcttagagcttatgactttcacatccttcaagccatgccaccaacacttagt 112  Q
    ||||||||||||||||||| |||||||  ||||||| ||||||||||||||||||||||||||| ||||    
T  5207181 aacattctcatcaatcttcatagagctcgtgacttttacatccttcaagccatgccaccaacacctagt 5207113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 66 - 133
Target Start/End: Complemental strand, 6231677 - 6231610
Alignment:
Q  66 gagcttatgactttcacatccttcaagccatgccaccaacacttagtttcagcagaaatgcaaaagca 133  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| |||  |||| ||||||||||    
T  6231677 gagcttatgactttcacattcttcaagccatgccaccaacacttagtatcactagaactgcaaaagca 6231610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 51 - 133
Target Start/End: Complemental strand, 5178874 - 5178792
Alignment:
Q  51 tcatcaatcttcttagagcttatgactttcacatccttcaagccatgccaccaacacttagtttcagcagaaatgcaaaagca 133  Q
    |||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||| |||  |||| |||| |||||    
T  5178874 tcatcaatcttcattgagcttatgactttcacattcttcaagccatgccaccaacacttagtatcactagaactgcacaagca 5178792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 212
Target Start/End: Complemental strand, 8306820 - 8306652
Alignment:
Q  44 aacattctcatcaatcttcttagagcttatgactttcacatccttcaagccatgccaccaacacttagtttcagcagaaatgcaaaagcaattgttctcn 143  Q
    ||||||||||||||| ||| | |||| | ||||||||| ||||||||||||||||||||||||||| || |||  |||  |||||||||| | ||  ||     
T  8306820 aacattctcatcaattttcattgagcgtgtgactttcaaatccttcaagccatgccaccaacactttgtatcattagagctgcaaaagcagtcgtcgtct 8306721  T
Q  144 nnnnnncccattagcgtctcatagaaaaactgtagttttagatgattaacaaaatagagttagaactca 212  Q
          | |||||| |||||||||||||||||||||||| ||   |||| |||| ||||||| ||||||    
T  8306720 tttcttctcattagagtctcatagaaaaactgtagttttggaaagttaataaaacagagttataactca 8306652  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 230
Target Start/End: Original strand, 8551885 - 8551956
Alignment:
Q  159 gtctcatagaaaaactgtagttttagatgattaacaaaatagagttagaactcacaagccacacataacatt 230  Q
    |||||||||||||||||||||||| ||  ||||| ||||||| |||| |||||| ||||  |||||||||||    
T  8551885 gtctcatagaaaaactgtagttttggacaattaataaaatagcgttataactcagaagctccacataacatt 8551956  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 103
Target Start/End: Original strand, 14878124 - 14878180
Alignment:
Q  47 attctcatcaatcttcttagagcttatgactttcacatccttcaagccatgccacca 103  Q
    ||||| |||||| ||| ||| |||  ||||||| |||||||||||||||||||||||    
T  14878124 attcttatcaatattcatagcgctagtgacttttacatccttcaagccatgccacca 14878180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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