View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2552_low_32 (Length: 284)
Name: NF2552_low_32
Description: NF2552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2552_low_32 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 12 - 267
Target Start/End: Original strand, 41571312 - 41571567
Alignment:
| Q |
12 |
ggagaagcaaaggggtgctgttttggatttgattaagaaggcaaatccgaatatatttgttcaaagcattgttaatggttgttatgatgcaccnnnnnnn |
111 |
Q |
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|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41571312 |
ggagaatccaaggggtgctgttttggatttgattaagaaggcaaatccgaatatatttgttcaaagcattgttaatggttgttatgatgcaccttttttt |
41571411 |
T |
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| Q |
112 |
gtgacaaggtttaaagaagctgtttttcattactcatcattgtttgatatgcttgataacaacaatgttgaacgtgaggatcctaataggttgatgtttg |
211 |
Q |
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| T |
41571412 |
gtgacaaggtttaaagaagctgtttttcattactcatcattgtttgatatgcttgataacaacaatgttgaacgtgaggatcctaataggttgatgtttg |
41571511 |
T |
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| Q |
212 |
aggaagagttttgggggaaggatataatgaatgttatagcttgtgaaggttgtgat |
267 |
Q |
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| T |
41571512 |
aggaagagttttgggggaaggatataatgaatgttatagcttgtgaaggttgtgat |
41571567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 22 - 267
Target Start/End: Original strand, 41590270 - 41590515
Alignment:
| Q |
22 |
aggggtgctgttttggatttgattaagaaggcaaatccgaatatatttgttcaaagcattgttaatggttgttatgatgcaccnnnnnnngtgacaaggt |
121 |
Q |
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| T |
41590270 |
aggggtgctgttttggatttgattaagaaggcaaatccgaatatatttattcatagcattgttaatggtggttatgatgcacctttttttgtgacaaggt |
41590369 |
T |
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| Q |
122 |
ttaaagaagctgtttttcattactcatcattgtttgatatgcttgataacaacaatgttgaacgtgaggatcctaataggttgatgtttgaggaagagtt |
221 |
Q |
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| T |
41590370 |
ttaaggaagctgttttttattattcagcattgtttgatatgcttgattacaacaatgttgaacgtgaggatccttttaggttgatgtttgaggtagtttt |
41590469 |
T |
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| Q |
222 |
ttgggggaaggatataatgaatgttatagcttgtgaaggttgtgat |
267 |
Q |
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| T |
41590470 |
ttgggggaatgatataatgaatgttatagcttgtgaaggttgtgat |
41590515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 24 - 267
Target Start/End: Original strand, 41583741 - 41583984
Alignment:
| Q |
24 |
gggtgctgttttggatttgattaagaaggcaaatccgaatatatttgttcaaagcattgttaatggttgttatgatgcaccnnnnnnngtgacaaggttt |
123 |
Q |
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| T |
41583741 |
gggtgatgttttggatttgattagaaagacaaatccgaatatatttattcatagcattgttaatggtggttacgatgaacctttttttgtgacaaggttt |
41583840 |
T |
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| Q |
124 |
aaagaagctgtttttcattactcatcattgtttgatatgcttgataacaacaatgttgaacgtgaggatcctaataggttgatgtttgaggaagagtttt |
223 |
Q |
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| T |
41583841 |
aaggaagctgtttttcattattcagcattgtttgatacgcttgatcacaacaatgttgaacgtgaggatcctattaggttgatgtttgaggaagtgtttt |
41583940 |
T |
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| Q |
224 |
gggggaaggatataatgaatgttatagcttgtgaaggttgtgat |
267 |
Q |
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| T |
41583941 |
gggggaaggatataatgaatgttatagcttgtgaaggttgtgat |
41583984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 24 - 267
Target Start/End: Original strand, 41557612 - 41557855
Alignment:
| Q |
24 |
gggtgctgttttggatttgattaagaaggcaaatccgaatatatttgttcaaagcattgttaatggttgttatgatgcaccnnnnnnngtgacaaggttt |
123 |
Q |
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| T |
41557612 |
gggtgctgttttggatttgattagaaagacaaatccgaatatatttattcatagcattgttaatggtggttacgatgaacctttttttgtgacaaggttt |
41557711 |
T |
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| Q |
124 |
aaagaagctgtttttcattactcatcattgtttgatatgcttgataacaacaatgttgaacgtgaggatcctaataggttgatgtttgaggaagagtttt |
223 |
Q |
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| T |
41557712 |
aaggaagctgtttttcattattcagcattgtttgatatgcttgataacaacaatgttgaacgtgaggatcctgttaggttgatgtttgagggagacgttt |
41557811 |
T |
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| Q |
224 |
gggggaaggatataatgaatgttatagcttgtgaaggttgtgat |
267 |
Q |
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| T |
41557812 |
gggggaaagatataatgaatgttatagcttgtgaaggttgtgat |
41557855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 199 - 262
Target Start/End: Complemental strand, 23916192 - 23916129
Alignment:
| Q |
199 |
aggttgatgtttgaggaagagttttgggggaaggatataatgaatgttatagcttgtgaaggtt |
262 |
Q |
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| T |
23916192 |
aggttgatgtttgagaaagagttctgggggagggaagtaatgaatattatagcctgtgaaggtt |
23916129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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