View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2552_low_34 (Length: 268)
Name: NF2552_low_34
Description: NF2552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2552_low_34 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 268
Target Start/End: Complemental strand, 26250369 - 26250117
Alignment:
| Q |
16 |
atgatattaatgactattttatgattgtttgaccggtcaaactcttacgacatatttttacannnnnnnnnnnnnnnnnngatcctatttgtcatgtttt |
115 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
26250369 |
atgatattaatgactattttacgattgtttgaccggtcaaactcttacgacatatttttacaatataatataatatatatgatcctatttgtcatgtttt |
26250270 |
T |
|
| Q |
116 |
gatacaaatattcttttttggtttcagggtaacttcagaaagttctgaatttttgttgccagtgatggaaaaattgaactcaaagctgtacttggagaac |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26250269 |
gatacaaatattcttttttggtttcagggtaacttcagaaagttctgaatttttgttgccagtgatggaaaaattgaactcaaagctgtacttggagaac |
26250170 |
T |
|
| Q |
216 |
tgttacattatgcaagagaatgagaaacttaggaagaaagcaaagcttctgaa |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26250169 |
tgttacattatgcaagagaatgagaaacttaggaagaaagcaaagcttctgaa |
26250117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University