View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2552_low_39 (Length: 250)
Name: NF2552_low_39
Description: NF2552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2552_low_39 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 29565106 - 29564866
Alignment:
| Q |
1 |
tgctggtgtgaaagtaagatagaattttgtggtgaagtggatctattactggtgtcttctgaagaacaagttccaattttttctgaaagattaactgttg |
100 |
Q |
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| T |
29565106 |
tgctggtgtgaaagtaagatagaattttgtggtgaagtggatctattactggtgtcttctgaagaacaagttccaattttttctgaaagattaactgttg |
29565007 |
T |
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| Q |
101 |
ttatgtcatgtatgcttgctctcctcttgtcttttcctcctgaaagttgtcttatgaaatacttttgagcatggcttgctacttgagttggtgttctcgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29565006 |
ttatgtcatgtatgcttgctctcctcttgtcttttcctcctgaaagttgtcttatgaaatacttttgagcatggcttgctacttgagttggtgttctcgt |
29564907 |
T |
|
| Q |
201 |
gatgacgaaattgcgcgaaatatttctccaatcacctttgc |
241 |
Q |
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| T |
29564906 |
gatgacgaaattgcgcgaaatatttctccaatcacctttgc |
29564866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 241
Target Start/End: Complemental strand, 35090973 - 35090883
Alignment:
| Q |
151 |
cttatgaaatacttttgagcatggcttgctacttgagttggtgttctcgtgatgacgaaattgcgcgaaatatttctccaatcacctttgc |
241 |
Q |
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| T |
35090973 |
cttatgtagtacttttgtgcatgacttgctacttgtgttggagtctttgtcacgacgaaattgcgcgagatgtttctccagtcgcctttgc |
35090883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 88 - 239
Target Start/End: Complemental strand, 25117079 - 25116928
Alignment:
| Q |
88 |
agattaactgttgttatgtcatgtatgcttgctctcctcttgtcttttcctcctgaaagttgtcttatgaaatacttttgagcatggcttgctacttgag |
187 |
Q |
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| T |
25117079 |
agattaactgttgttatgtcatgaatgcttgctcttcttttgtctttgcctcctgaaagttgtctgatgaaatatttctgagcatggctagctacttgtg |
25116980 |
T |
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| Q |
188 |
ttggtgttctcgtgatgacgaaattgcgcgaaatatttctccaatcaccttt |
239 |
Q |
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| T |
25116979 |
ttggtgtcctagtgatcacaaagttccttgaaatgtttctccaatcaccttt |
25116928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 120 - 233
Target Start/End: Complemental strand, 24522103 - 24521990
Alignment:
| Q |
120 |
tctcctcttgtcttttcctcctgaaagttgtcttatgaaatacttttgagcatggcttgctacttgagttggtgttctcgtgatgacgaaattgcgcgaa |
219 |
Q |
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||||||||| || || ||||||||||| || || ||||||||||| |||||||| ||||| |||||||||||||| || ||| | |||||||| | || |
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| T |
24522103 |
tctcctcttatccttccctcctgaaagctgcctaatgaaatacttctgagcatgacttgcgacttgagttggtgtccttgtggtcacgaaattcctagag |
24522004 |
T |
|
| Q |
220 |
atatttctccaatc |
233 |
Q |
| |
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| T |
24522003 |
atgtttctccaatc |
24521990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 34848529 - 34848489
Alignment:
| Q |
157 |
aaatacttttgagcatggcttgctacttgagttggtgttct |
197 |
Q |
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| T |
34848529 |
aaatacttttgagcatggcttgcaacttgtgttggtgttct |
34848489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 194
Target Start/End: Complemental strand, 46325981 - 46325941
Alignment:
| Q |
154 |
atgaaatacttttgagcatggcttgctacttgagttggtgt |
194 |
Q |
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| T |
46325981 |
atgaaatacttttgtgcatgacttgctacttgtgttggtgt |
46325941 |
T |
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