View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2552_low_4 (Length: 566)
Name: NF2552_low_4
Description: NF2552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2552_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 7 - 554
Target Start/End: Original strand, 14050540 - 14051087
Alignment:
| Q |
7 |
gttcattatcaacaaaaaagtagagcatatacccatagagattgttaaacatgatttatgtgtgtgcatttctgatgggattctactatcaattattatg |
106 |
Q |
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| T |
14050540 |
gttcattatcaacaaaaaagtagagcatatacccatagagattgttaaacatgatttatgtgtgtgcatttcttatgggattctactatcaattattatg |
14050639 |
T |
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| Q |
107 |
tcatttgaacaataacagttagctgtatttgagtatattagagataatacttttttattgaaccattgtccctgaactgtgaatggtatgtctttggtag |
206 |
Q |
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| T |
14050640 |
tcatttgaacaataacagttagctgtatttgagtatattggagataatacttttttattgaaccattgttcctggattgtgaatggcatgtctttggtag |
14050739 |
T |
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| Q |
207 |
tatggaggtttcttctccagaaactttatatttttccagcaaaacatctggctttgaggattttgattttgaaattgatggagattctcgcagtccttcc |
306 |
Q |
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| T |
14050740 |
tatgaaggtttcttctccagaaactttatatttttccagcaaaacttctggctttgaggattttgattttgaaattgatggagattctcgcagtccttcc |
14050839 |
T |
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| Q |
307 |
tttaagggtatggaatcatttgaagattctgtttttgaatatgatgtaaactttattctaaattcatacacttgggtccacaacttttctgaatgtacta |
406 |
Q |
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| T |
14050840 |
tttaaggctatggaatcatttgaagaatctgttttttgatatgatgtatactttatcctaaattcataaacttgggtccataacttttctgaatgtacta |
14050939 |
T |
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| Q |
407 |
atcttttatctaattatgtggtgagtttctcttggtgattactttgtaaactttattcttcatttctttatttattcttatgtttcatctttgaaatatt |
506 |
Q |
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| T |
14050940 |
atcttttatctaattacgtggtgagtttctcttggtgattactttgtaaattttattcttcatttctttatttagtcttatgtttcatctttgaaatatt |
14051039 |
T |
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| Q |
507 |
gtagactattccttcttcaattatccaagatacagtgctgaagtcctt |
554 |
Q |
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| T |
14051040 |
gtaaactattccttcttcaattgtccaagatacagtgctgaaatcctt |
14051087 |
T |
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