View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2552_low_40 (Length: 250)

Name: NF2552_low_40
Description: NF2552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2552_low_40
NF2552_low_40
[»] chr2 (9 HSPs)
chr2 (169-241)||(17692632-17692704)
chr2 (173-241)||(37259669-37259737)
chr2 (175-241)||(16431889-16431955)
chr2 (173-241)||(14805572-14805640)
chr2 (189-241)||(15332771-15332823)
chr2 (173-241)||(33751504-33751572)
chr2 (174-241)||(7091127-7091194)
chr2 (174-241)||(37080743-37080810)
chr2 (178-210)||(33660536-33660568)
[»] scaffold0166 (1 HSPs)
scaffold0166 (174-241)||(25091-25158)
[»] chr7 (5 HSPs)
chr7 (174-241)||(45974461-45974528)
chr7 (175-241)||(29245290-29245356)
chr7 (174-241)||(6444179-6444246)
chr7 (172-241)||(34095869-34095938)
chr7 (175-241)||(47329682-47329748)
[»] chr5 (7 HSPs)
chr5 (174-241)||(24782708-24782775)
chr5 (167-241)||(31480452-31480526)
chr5 (165-241)||(40321511-40321587)
chr5 (175-241)||(41405992-41406058)
chr5 (175-241)||(1836031-1836097)
chr5 (175-241)||(39885853-39885919)
chr5 (178-210)||(7693233-7693265)
[»] chr8 (5 HSPs)
chr8 (175-241)||(533722-533788)
chr8 (175-241)||(13800640-13800706)
chr8 (175-241)||(3877569-3877635)
chr8 (178-226)||(30089219-30089267)
chr8 (178-241)||(30936663-30936727)
[»] chr3 (9 HSPs)
chr3 (169-241)||(39831195-39831267)
chr3 (175-241)||(29835796-29835862)
chr3 (175-241)||(12945491-12945557)
chr3 (175-241)||(20108083-20108149)
chr3 (174-241)||(31654615-31654683)
chr3 (175-241)||(33213415-33213481)
chr3 (175-241)||(5234743-5234809)
chr3 (175-241)||(29702389-29702455)
chr3 (175-223)||(13006899-13006947)
[»] chr4 (10 HSPs)
chr4 (175-241)||(20135449-20135515)
chr4 (174-241)||(55917400-55917467)
chr4 (175-241)||(42063003-42063069)
chr4 (176-241)||(47028101-47028166)
chr4 (178-241)||(28683093-28683155)
chr4 (175-230)||(45988116-45988171)
chr4 (175-241)||(24226870-24226936)
chr4 (175-241)||(42980263-42980330)
chr4 (169-227)||(15530054-15530112)
chr4 (178-211)||(9139250-9139283)
[»] chr1 (6 HSPs)
chr1 (175-241)||(45346264-45346330)
chr1 (175-241)||(12983558-12983624)
chr1 (175-241)||(45319607-45319673)
chr1 (175-241)||(47036282-47036348)
chr1 (181-241)||(22105398-22105458)
chr1 (178-241)||(49410539-49410602)
[»] scaffold0896 (1 HSPs)
scaffold0896 (175-241)||(1964-2030)
[»] chr6 (2 HSPs)
chr6 (175-241)||(7124334-7124400)
chr6 (184-241)||(4181260-4181317)
[»] scaffold0662 (1 HSPs)
scaffold0662 (176-241)||(6980-7045)


Alignment Details
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 17692704 - 17692632
Alignment:
Q  169 aaacatgggaaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaagaataat 241  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  17692704 aaacatggaaaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaataataat 17692632  T

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Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 173 - 241
Target Start/End: Original strand, 37259669 - 37259737
Alignment:
Q  173 atgggaaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaagaataat 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  37259669 atgggaaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaataataat 37259737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 175 - 241
Target Start/End: Complemental strand, 16431955 - 16431889
Alignment:
Q  175 gggaaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaagaataat 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  16431955 gggaaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaataataat 16431889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 173 - 241
Target Start/End: Original strand, 14805572 - 14805640
Alignment:
Q  173 atgggaaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaagaataat 241  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  14805572 atgggaaattctatggtgaagtcattaaattgaatttttcagagaagttatcctacatccaataataat 14805640  T

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Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 189 - 241
Target Start/End: Complemental strand, 15332823 - 15332771
Alignment:
Q  189 tgaagtcattaaattgactttttcagagaagttatcctacatccaagaataat 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  15332823 tgaagtcattaaattgactttttcagagaagttatcctacatccaataataat 15332771  T

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Target: chr2; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 173 - 241
Target Start/End: Original strand, 33751504 - 33751572
Alignment:
Q  173 atgggaaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaagaataat 241  Q
    ||||||||||||||||||||||| || ||||||||||||| | ||||||| ||||||||||| ||||||    
T  33751504 atgggaaattctatggtgaagtcgttcaattgactttttcggtgaagttaccctacatccaataataat 33751572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 174 - 241
Target Start/End: Complemental strand, 7091194 - 7091127
Alignment:
Q  174 tgggaaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaagaataat 241  Q
    |||||||||||||||||||||| || ||||||||||||| | ||||||| ||||||||||| ||||||    
T  7091194 tgggaaattctatggtgaagtcgttcaattgactttttcggtgaagttaccctacatccaataataat 7091127  T

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Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 174 - 241
Target Start/End: Complemental strand, 37080810 - 37080743
Alignment:
Q  174 tgggaaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaagaataat 241  Q
    ||||||||||||||||||||| ||| ||||||||||||    ||||||||||||||||||| ||||||    
T  37080810 tgggaaattctatggtgaagttattcaattgacttttttgatgaagttatcctacatccaataataat 37080743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 210
Target Start/End: Complemental strand, 33660568 - 33660536
Alignment:
Q  178 aaattctatggtgaagtcattaaattgactttt 210  Q
    |||||||||||||||||||||||| ||||||||    
T  33660568 aaattctatggtgaagtcattaaaatgactttt 33660536  T

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Target: scaffold0166 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 174 - 241
Target Start/End: Original strand, 25091 - 25158
Alignment:
Q  174 tgggaaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaagaataat 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  25091 tgggaaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaataataat 25158  T

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Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 174 - 241
Target Start/End: Complemental strand, 45974528 - 45974461
Alignment:
Q  174 tgggaaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaagaataat 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  45974528 tgggaaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaataataat 45974461  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 175 - 241
Target Start/End: Complemental strand, 29245356 - 29245290
Alignment:
Q  175 gggaaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaagaataat 241  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  29245356 gggaaattctatggtgaagttattaaattgactttttcagagaagttatcctacatccaataataat 29245290  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 174 - 241
Target Start/End: Complemental strand, 6444246 - 6444179
Alignment:
Q  174 tgggaaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaagaataat 241  Q
    ||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||| ||| ||||||    
T  6444246 tgggaaattctatggtgaagtcattcaattgactttttcggtgaagttatcctacattcaataataat 6444179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 172 - 241
Target Start/End: Complemental strand, 34095938 - 34095869
Alignment:
Q  172 catgggaaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaagaataat 241  Q
    ||||||||||||||||||||||||||| ||||||||||||  | ||||||||||||||| ||| ||||||    
T  34095938 catgggaaattctatggtgaagtcattcaattgacttttttggtgaagttatcctacattcaataataat 34095869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 241
Target Start/End: Complemental strand, 47329748 - 47329682
Alignment:
Q  175 gggaaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaagaataat 241  Q
    |||||||| ||||||||||| ||| ||||||||||||    ||||||||||||||||||| ||||||    
T  47329748 gggaaattttatggtgaagttattcaattgacttttttgatgaagttatcctacatccaataataat 47329682  T

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Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 174 - 241
Target Start/End: Original strand, 24782708 - 24782775
Alignment:
Q  174 tgggaaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaagaataat 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  24782708 tgggaaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaataataat 24782775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 167 - 241
Target Start/End: Original strand, 31480452 - 31480526
Alignment:
Q  167 aaaaacatgggaaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaagaataat 241  Q
    ||||| |||||||||||||||| ||||||||| ||||||||||||| | ||||||| ||||||||||| ||||||    
T  31480452 aaaaatatgggaaattctatggagaagtcattcaattgactttttcggtgaagttaccctacatccaataataat 31480526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 165 - 241
Target Start/End: Complemental strand, 40321587 - 40321511
Alignment:
Q  165 ttaaaaacatgggaaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaagaataat 241  Q
    |||| |||||||||||||||||||||||||  || |||||||||||||   ||||||||||||||||||| ||||||    
T  40321587 ttaagaacatgggaaattctatggtgaagttgttcaattgactttttcgatgaagttatcctacatccaataataat 40321511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 241
Target Start/End: Original strand, 41405992 - 41406058
Alignment:
Q  175 gggaaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaagaataat 241  Q
    ||||||||||||||||||||  || |||||||||||||   ||||||||||||||||||| ||||||    
T  41405992 gggaaattctatggtgaagttgttcaattgactttttcgatgaagttatcctacatccaataataat 41406058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 241
Target Start/End: Complemental strand, 1836097 - 1836031
Alignment:
Q  175 gggaaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaagaataat 241  Q
    ||||||||||||||||||||  || |||||| ||||||   ||||||||||||||||||| ||||||    
T  1836097 gggaaattctatggtgaagttgttcaattgattttttcgatgaagttatcctacatccaataataat 1836031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 241
Target Start/End: Complemental strand, 39885919 - 39885853
Alignment:
Q  175 gggaaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaagaataat 241  Q
    ||||||||||||||||||||  || ||||||||||||| | ||||||| |||| || ||| ||||||    
T  39885919 gggaaattctatggtgaagttgttcaattgactttttcggtgaagttaccctaaattcaataataat 39885853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 210
Target Start/End: Original strand, 7693233 - 7693265
Alignment:
Q  178 aaattctatggtgaagtcattaaattgactttt 210  Q
    |||||||||||||||||||||||| ||||||||    
T  7693233 aaattctatggtgaagtcattaaaatgactttt 7693265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 175 - 241
Target Start/End: Complemental strand, 533788 - 533722
Alignment:
Q  175 gggaaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaagaataat 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  533788 gggaaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaataataat 533722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 175 - 241
Target Start/End: Original strand, 13800640 - 13800706
Alignment:
Q  175 gggaaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaagaataat 241  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||  |||||||||| ||||||    
T  13800640 gggaaattctatggtgaagtcattcaattgactttttcagtgaagttactctacatccaataataat 13800706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 241
Target Start/End: Original strand, 3877569 - 3877635
Alignment:
Q  175 gggaaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaagaataat 241  Q
    ||||||||||||||||||||| || |||||| |||||| | ||||||| ||||||||||| ||||||    
T  3877569 gggaaattctatggtgaagtcgttcaattgattttttcggtgaagttaccctacatccaataataat 3877635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 226
Target Start/End: Complemental strand, 30089267 - 30089219
Alignment:
Q  178 aaattctatggtgaagtcattaaattgactttttcagagaagttatcct 226  Q
    |||||||||||||||||| || ||||||||||||||| |||||||||||    
T  30089267 aaattctatggtgaagtctttcaattgactttttcagtgaagttatcct 30089219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 241
Target Start/End: Original strand, 30936663 - 30936727
Alignment:
Q  178 aaattctatggtgaagtcattaaattgactttttcag-agaagttatcctacatccaagaataat 241  Q
    ||||||||||||||||| ||| ||||||||||||| | | || | ||||||||||||| ||||||    
T  30936663 aaattctatggtgaagttatttaattgactttttcggtaaaattaatcctacatccaataataat 30936727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 39831195 - 39831267
Alignment:
Q  169 aaacatgggaaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaagaataat 241  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  39831195 aaacttgggaaattctatggtgaagtcattaaattgactttttcagagcagttatcctacatccaataataat 39831267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 175 - 241
Target Start/End: Complemental strand, 29835862 - 29835796
Alignment:
Q  175 gggaaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaagaataat 241  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||| ||||||    
T  29835862 gggaaattctatggtgaagtcattcaattgactttttcagtgaagttaccctacatccaataataat 29835796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 241
Target Start/End: Complemental strand, 12945557 - 12945491
Alignment:
Q  175 gggaaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaagaataat 241  Q
    ||||||||||||||||||||  || |||||||||||||   ||||||||||||||||||| ||||||    
T  12945557 gggaaattctatggtgaagttgttcaattgactttttcgatgaagttatcctacatccaataataat 12945491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 241
Target Start/End: Complemental strand, 20108149 - 20108083
Alignment:
Q  175 gggaaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaagaataat 241  Q
    |||||||||||||||||||| ||| ||||||||||||  | ||||||||| ||||||||| ||||||    
T  20108149 gggaaattctatggtgaagttattcaattgacttttttggtgaagttatcttacatccaataataat 20108083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 241
Target Start/End: Original strand, 31654615 - 31654683
Alignment:
Q  174 tgggaaattctatggtgaagtcattaaattgactttttcagagaagttatcctac-atccaagaataat 241  Q
    |||||||||||| |||||||||||| |||| |||||||| | ||||||||||||| |||||| ||||||    
T  31654615 tgggaaattctacggtgaagtcattcaattaactttttcggtgaagttatcctacgatccaataataat 31654683  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 241
Target Start/End: Original strand, 33213415 - 33213481
Alignment:
Q  175 gggaaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaagaataat 241  Q
    ||||||||||||||| |||||||| |||||||||||||   ||||||| | ||||||||| ||||||    
T  33213415 gggaaattctatggtaaagtcatttaattgactttttcgatgaagttaccatacatccaataataat 33213481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 241
Target Start/End: Complemental strand, 5234809 - 5234743
Alignment:
Q  175 gggaaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaagaataat 241  Q
    |||||||| ||||||||||| ||| ||||||||||||    ||||||||||||||| ||| ||||||    
T  5234809 gggaaattttatggtgaagttattcaattgacttttttgatgaagttatcctacattcaataataat 5234743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 241
Target Start/End: Original strand, 29702389 - 29702455
Alignment:
Q  175 gggaaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaagaataat 241  Q
    ||||||||||||||||||||  || ||||||||||||| | ||||||| |||| || ||| ||||||    
T  29702389 gggaaattctatggtgaagttgttcaattgactttttcggtgaagttaccctaaattcaataataat 29702455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 13006899 - 13006947
Alignment:
Q  175 gggaaattctatggtgaagtcattaaattgactttttcagagaagttat 223  Q
    |||||||| |||||||||||| ||||| ||||||||| || ||||||||    
T  13006899 gggaaattatatggtgaagtcgttaaaatgacttttttagtgaagttat 13006947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 175 - 241
Target Start/End: Complemental strand, 20135515 - 20135449
Alignment:
Q  175 gggaaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaagaataat 241  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  20135515 gggaaattctatggtgaagtcattaaattgactttttcagagcagttatcctacatccaataataat 20135449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 174 - 241
Target Start/End: Original strand, 55917400 - 55917467
Alignment:
Q  174 tgggaaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaagaataat 241  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  55917400 tggggaattctatggtgaagtcattaaattgactttttcagagaagttatcctacattcaataataat 55917467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 175 - 241
Target Start/End: Original strand, 42063003 - 42063069
Alignment:
Q  175 gggaaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaagaataat 241  Q
    |||||||||||||||||||||||| ||||||||||||  | ||||||||||||||| ||| ||||||    
T  42063003 gggaaattctatggtgaagtcattcaattgacttttttggtgaagttatcctacattcaataataat 42063069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 176 - 241
Target Start/End: Original strand, 47028101 - 47028166
Alignment:
Q  176 ggaaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaagaataat 241  Q
    ||||||||||||||||||||||| ||||||||||||  | ||||||||||||||| ||| ||||||    
T  47028101 ggaaattctatggtgaagtcattcaattgacttttttggtgaagttatcctacattcaataataat 47028166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 178 - 241
Target Start/End: Complemental strand, 28683155 - 28683093
Alignment:
Q  178 aaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaagaataat 241  Q
    |||||||||||||||||| |||||||||| ||||| | ||||||||||||||||||| ||||||    
T  28683155 aaattctatggtgaagtccttaaattgac-ttttcggtgaagttatcctacatccaataataat 28683093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 175 - 230
Target Start/End: Original strand, 45988116 - 45988171
Alignment:
Q  175 gggaaattctatggtgaagtcattaaattgactttttcagagaagttatcctacat 230  Q
    |||||||| ||||||||||||||| ||||||||||||| | |||||||||||||||    
T  45988116 gggaaattttatggtgaagtcattcaattgactttttcggtgaagttatcctacat 45988171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 241
Target Start/End: Original strand, 24226870 - 24226936
Alignment:
Q  175 gggaaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaagaataat 241  Q
    ||||||||||||||||||||  || |||||||||||||   ||||||||||||||||||| ||||||    
T  24226870 gggaaattctatggtgaagttgttcaattgactttttcgatgaagttatcctacatccaataataat 24226936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 241
Target Start/End: Complemental strand, 42980330 - 42980263
Alignment:
Q  175 gggaaattctatggtgaagtcattaaattgactttttcagagaagttatcctac-atccaagaataat 241  Q
    ||||||||||| |||||||||||| |||| ||||||||   ||||||||||||| |||||| ||||||    
T  42980330 gggaaattctacggtgaagtcattcaattaactttttcgatgaagttatcctacgatccaataataat 42980263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 15530054 - 15530112
Alignment:
Q  169 aaacatgggaaattctatggtgaagtcattaaattgactttttcagagaagttatccta 227  Q
    |||| |||||||||||||||||||||  || ||||||||||||| | ||||||| ||||    
T  15530054 aaacttgggaaattctatggtgaagttgttcaattgactttttcggtgaagttacccta 15530112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 211
Target Start/End: Original strand, 9139250 - 9139283
Alignment:
Q  178 aaattctatggtgaagtcattaaattgacttttt 211  Q
    |||||||||||||||||||| |||||||||||||    
T  9139250 aaattctatggtgaagtcatgaaattgacttttt 9139283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 175 - 241
Target Start/End: Original strand, 45346264 - 45346330
Alignment:
Q  175 gggaaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaagaataat 241  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  45346264 gggaaattctacggtgaagtcattaaattgactttttcagagaagttatcctacatccaataataat 45346330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 175 - 241
Target Start/End: Complemental strand, 12983624 - 12983558
Alignment:
Q  175 gggaaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaagaataat 241  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||    
T  12983624 gggaaattctatggtgaagtcaataaattgactttttcagagaagttatcctacattcaataataat 12983558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 241
Target Start/End: Original strand, 45319607 - 45319673
Alignment:
Q  175 gggaaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaagaataat 241  Q
    |||||||||||||||||||||||| ||||||||||||  | ||||||||| ||||| ||| ||||||    
T  45319607 gggaaattctatggtgaagtcattcaattgacttttttggtgaagttatcttacattcaataataat 45319673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 241
Target Start/End: Complemental strand, 47036348 - 47036282
Alignment:
Q  175 gggaaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaagaataat 241  Q
    |||||||||||||||||||||||| ||||||||| ||||  ||||||| | ||||||||| ||||||    
T  47036348 gggaaattctatggtgaagtcattcaattgacttcttcaatgaagttaccatacatccaataataat 47036282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 241
Target Start/End: Original strand, 22105398 - 22105458
Alignment:
Q  181 ttctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaagaataat 241  Q
    ||||||| ||||||  || ||||||||||||| | ||||||||||||||||||| ||||||    
T  22105398 ttctatgatgaagttcttcaattgactttttcggtgaagttatcctacatccaataataat 22105458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 241
Target Start/End: Complemental strand, 49410602 - 49410539
Alignment:
Q  178 aaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaagaataat 241  Q
    |||||||||||||||||  || || |||||||||| | ||||||| ||||||||||| ||||||    
T  49410602 aaattctatggtgaagttcttcaaatgactttttcggtgaagttaccctacatccaataataat 49410539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0896 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 175 - 241
Target Start/End: Complemental strand, 2030 - 1964
Alignment:
Q  175 gggaaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaagaataat 241  Q
    ||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||| ||| ||||||    
T  2030 gggaaattctacggtgaagtcattcaattgactttttcagtgaagttatcctacattcaataataat 1964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 175 - 241
Target Start/End: Original strand, 7124334 - 7124400
Alignment:
Q  175 gggaaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaagaataat 241  Q
    ||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||| ||| ||||||    
T  7124334 gggaaattctacggtgaagtcattcaattgactttttcagtgaagttatcctacattcaataataat 7124400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 4181317 - 4181260
Alignment:
Q  184 tatggtgaagtcattaaattgactttttcagagaagttatcctacatccaagaataat 241  Q
    ||||||||||| ||| ||||||||||||    ||||||||||||||||||| ||||||    
T  4181317 tatggtgaagttattcaattgactttttttatgaagttatcctacatccaataataat 4181260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 176 - 241
Target Start/End: Original strand, 6980 - 7045
Alignment:
Q  176 ggaaattctatggtgaagtcattaaattgactttttcagagaagttatcctacatccaagaataat 241  Q
    ||||||||||||||||||||||| ||||||||||||  | ||||||||||||||| ||| ||||||    
T  6980 ggaaattctatggtgaagtcattcaattgacttttttggtgaagttatcctacattcaataataat 7045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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