View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2552_low_44 (Length: 239)

Name: NF2552_low_44
Description: NF2552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2552_low_44
NF2552_low_44
[»] chr2 (2 HSPs)
chr2 (2-239)||(31481631-31481868)
chr2 (2-85)||(30268912-30268995)
[»] chr8 (2 HSPs)
chr8 (2-174)||(27813627-27813798)
chr8 (48-225)||(4742824-4743000)
[»] chr7 (2 HSPs)
chr7 (2-85)||(4683211-4683294)
chr7 (7-117)||(27137377-27137491)
[»] chr4 (2 HSPs)
chr4 (2-85)||(53302238-53302321)
chr4 (2-85)||(47064147-47064230)
[»] chr3 (1 HSPs)
chr3 (2-85)||(7404212-7404295)
[»] chr1 (1 HSPs)
chr1 (63-192)||(47799808-47799935)
[»] chr6 (1 HSPs)
chr6 (2-45)||(30824851-30824894)


Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 2 - 239
Target Start/End: Complemental strand, 31481868 - 31481631
Alignment:
Q  2 tagggttgaagaaatggatattggttccttgatggtacagaagctgatcaggttcccatcatgcagaaccaaaatattgctgctccagtgccggcagtgg 101  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31481868 tagggttgaagaaatggatattggtttcttgatggtacagaagccgatcaggttcccatcatgcagaaccaaaatattgctgctccagtgccggcagtgg 31481769  T
Q  102 tggctctcggagaggagaggacgattgtgtacattggtcggaggctgattttgttatgcggtgccactgcagttgtaggcaattatattggaaatatctg 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  31481768 tggctctcggagaggagaggacgattgtgtacattggtcggaggctgattttgttatgtggtgccactgcagttgtaggcaattatattggaaatatctg 31481669  T
Q  202 aaacattataaattaaagtttgatgcctgggaatatct 239  Q
    |||||| |||||||||||||||||||||||||||||||    
T  31481668 aaacatcataaattaaagtttgatgcctgggaatatct 31481631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 30268995 - 30268912
Alignment:
Q  2 tagggttgaagaaatggatattggttccttgatggtacagaagctgatcaggttcccatcatgcagaaccaaaatattgctgct 85  Q
    |||||||||||||||||||||| |||||| |||| ||||||||  | |||| ||||| |||  || ||||||| ||||||||||    
T  30268995 tagggttgaagaaatggatattagttcctcgatgatacagaagtcggtcagtttcccgtcacacacaaccaaactattgctgct 30268912  T

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Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 2 - 174
Target Start/End: Complemental strand, 27813798 - 27813627
Alignment:
Q  2 tagggttgaagaaatggatattggttccttgatggtacagaagctgatcaggttcccatcatgcagaaccaaaatattgctgctccagtgccggcagtgg 101  Q
    |||||||||||||||||||||| ||| || ||||||||| | || |||||| || || ||| ||| ||||||| |||||||||| |||  ||| ||||||    
T  27813798 tagggttgaagaaatggatatttgtttctcgatggtacaaatgccgatcagttttccgtcacgcacaaccaaactattgctgcttcagctccgacagtgg 27813699  T
Q  102 tggctctcggagaggagaggacgattgtgtacattggtcggaggctgattttgttatgcggtgccactgcagt 174  Q
    ||||| || |||  || ||||   ||||||||||||||||| ||||||||||||||||  |||||||||||||    
T  27813698 tggctatcagagccgaaaggatacttgtgtacattggtcgg-ggctgattttgttatgtagtgccactgcagt 27813627  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 48 - 225
Target Start/End: Complemental strand, 4743000 - 4742824
Alignment:
Q  48 atcaggttcccatcatgcagaaccaaaatattgctgctccagtgccggcagtggtggctctcggagaggagaggacgattgtgtacattggtcggaggct 147  Q
    |||| |||||| || |||||||||||| | ||||||||||||   |  ||||||||||  | |||||||||||||||  |||||||||||||||||||||    
T  4743000 atcatgttcccgtcgtgcagaaccaaactgttgctgctccagcttcaacagtggtggcatttggagaggagaggacgtctgtgtacattggtcggaggct 4742901  T
Q  148 gattttgttatgcggtgccactgcagttgtaggcaattatattggaaatatctgaaacattataaattaaagtttgat 225  Q
    ||||||||| ||  | |||||||   ||| |||||||||| |||| || ||| |||| | |||||||| |||| ||||    
T  4742900 gattttgttctgttgggccactg-tcttgaaggcaattatgttgggaacatccgaaatactataaattcaagtatgat 4742824  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 85
Target Start/End: Original strand, 4683211 - 4683294
Alignment:
Q  2 tagggttgaagaaatggatattggttccttgatggtacagaagctgatcaggttcccatcatgcagaaccaaaatattgctgct 85  Q
    |||| ||||||||||||||||| |||||| |||| ||||||||| | |||| ||||| ||| ||| ||||||| ||||||||||    
T  4683211 taggattgaagaaatggatattagttcctcgatgatacagaagccggtcagtttcccgtcacgcacaaccaaactattgctgct 4683294  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 117
Target Start/End: Complemental strand, 27137491 - 27137377
Alignment:
Q  7 ttgaagaaatggatattggttccttgatggtacagaagctgatcaggttcccat----catgcagaaccaaaatattgctgctccagtgccggcagtggt 102  Q
    |||||||||||||||||| ||||| ||| || ||||||||| ||| ||| || |    |||||||||||||| | ||| ||||| |||||| | ||||||    
T  27137491 ttgaagaaatggatattgattcctcgattgtgcagaagctggtcacgtttccgtcatgcatgcagaaccaaactgttgttgctctagtgcctgaagtggt 27137392  T
Q  103 ggctctcggagagga 117  Q
    |||| | ||||||||    
T  27137391 ggctgttggagagga 27137377  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 53302321 - 53302238
Alignment:
Q  2 tagggttgaagaaatggatattggttccttgatggtacagaagctgatcaggttcccatcatgcagaaccaaaatattgctgct 85  Q
    |||||||||||||||||||||| |||||| |||| ||||||||  | |||| ||||| ||| ||| ||||||| ||||||||||    
T  53302321 tagggttgaagaaatggatattagttcctcgatgatacagaagtcggtcagtttcccgtcacgcacaaccaaagtattgctgct 53302238  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 85
Target Start/End: Original strand, 47064147 - 47064230
Alignment:
Q  2 tagggttgaagaaatggatattggttccttgatggtacagaagctgatcaggttcccatcatgcagaaccaaaatattgctgct 85  Q
    ||||||| |||||||||||||| |||||| |||| ||||||||  | |||| ||||| ||| ||| ||||||| ||||||||||    
T  47064147 tagggttaaagaaatggatattagttcctcgatgatacagaagtcggtcagtttcccgtcacgcacaaccaaactattgctgct 47064230  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 85
Target Start/End: Original strand, 7404212 - 7404295
Alignment:
Q  2 tagggttgaagaaatggatattggttccttgatggtacagaagctgatcaggttcccatcatgcagaaccaaaatattgctgct 85  Q
    |||| ||||||||||||||||| |||||| |||| ||||||||| | |||| ||||| ||| ||| ||||||| ||||||||||    
T  7404212 taggattgaagaaatggatattagttcctcgatgatacagaagccggtcagtttcccgtcacgcacaaccaaactattgctgct 7404295  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 63 - 192
Target Start/End: Original strand, 47799808 - 47799935
Alignment:
Q  63 tgcagaaccaaaatattgctgctccagtgccggcagtggtggctctcggagaggagaggacgattgtgtacattggtcggaggctgattttgttatgcgg 162  Q
    |||| ||||||| ||  ||||||||||  ||| || ||||| || |||||||||||||||||  ||||||||  ||||||||||||||||| |  || ||    
T  47799808 tgcataaccaaactacggctgctccagcaccgacaatggtgcctgtcggagaggagaggacgcatgtgtacaccggtcggaggctgattttat--tgtgg 47799905  T
Q  163 tgccactgcagttgtaggcaattatattgg 192  Q
    ||||| |||| ||| |||||| ||||||||    
T  47799906 tgccattgcacttgaaggcaactatattgg 47799935  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 30824894 - 30824851
Alignment:
Q  2 tagggttgaagaaatggatattggttccttgatggtacagaagc 45  Q
    |||||||||||||||||||||| |||||| ||||||||| ||||    
T  30824894 tagggttgaagaaatggatatttgttcctcgatggtacaaaagc 30824851  T

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