View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2552_low_47 (Length: 223)
Name: NF2552_low_47
Description: NF2552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2552_low_47 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 12 - 223
Target Start/End: Original strand, 887862 - 888073
Alignment:
| Q |
12 |
ataggatcacaaagttcatgaatcttaaaacaaacattctcatcaatcttcatatttaaacagtacagacaaaagtaatataacaatcataaactgatat |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
887862 |
ataggatcacaaagttcatgaatcttaaaacaaacattctcatcaatcttcatatttaaacagtacagacaaaggtaatataacaatcataaactgatat |
887961 |
T |
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| Q |
112 |
atcatatgtgaacctcaaaataattaaagattcaagttattaatcaaattactaaataaagaaaagtgactaacttcactaaatcttggaaatgaatcat |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
887962 |
atcatatgtgaacctcaaaataattaaagattcaagttataaatcaaattactaaataaagaaaagtgactaacttcactaaatcttggaaatgaatcat |
888061 |
T |
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| Q |
212 |
caaaaggaatca |
223 |
Q |
| |
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|||||||||||| |
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| T |
888062 |
caaaaggaatca |
888073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 148
Target Start/End: Original strand, 32847516 - 32847564
Alignment:
| Q |
100 |
ataaactgatatatcatatgtgaacctcaaaataattaaagattcaagt |
148 |
Q |
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|||| |||||||||||||| ||| ||||||||||||| ||||||||||| |
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| T |
32847516 |
ataagctgatatatcatatatgagcctcaaaataattcaagattcaagt |
32847564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 1003069 - 1003014
Alignment:
| Q |
168 |
taaagaaaagtgactaacttcactaaatcttggaaatgaatcatcaaaaggaatca |
223 |
Q |
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|||||||||| |||||||| |||||||| | |||||||| |||| ||||||||||| |
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| T |
1003069 |
taaagaaaagcgactaactacactaaatttaggaaatgattcattaaaaggaatca |
1003014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 65
Target Start/End: Complemental strand, 1187269 - 1187238
Alignment:
| Q |
34 |
tcttaaaacaaacattctcatcaatcttcata |
65 |
Q |
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| T |
1187269 |
tcttaaaacaaacattctcatcaatcttcata |
1187238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 160
Target Start/End: Original strand, 4433089 - 4433135
Alignment:
| Q |
114 |
catatgtgaacctcaaaataattaaagattcaagttattaatcaaat |
160 |
Q |
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||||| ||||||||||||||||| ||||||||||| || |||||||| |
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| T |
4433089 |
catatatgaacctcaaaataattcaagattcaagtcataaatcaaat |
4433135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 106 - 160
Target Start/End: Complemental strand, 30051731 - 30051677
Alignment:
| Q |
106 |
tgatatatcatatgtgaacctcaaaataattaaagattcaagttattaatcaaat |
160 |
Q |
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||||||||||||| |||| |||||||||||| |||||||||||||| ||||||| |
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|
| T |
30051731 |
tgatatatcatatatgaatctcaaaataattcaagattcaagttatatatcaaat |
30051677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 11443447 - 11443398
Alignment:
| Q |
99 |
cataaactgatatatcatatgtgaacctcaaaataattaaagattcaagt |
148 |
Q |
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|
||||| |||||||||||||| ||||| ||||||||||| ||||||||||| |
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| T |
11443447 |
cataagctgatatatcatatatgaacttcaaaataattcaagattcaagt |
11443398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 25016766 - 25016718
Alignment:
| Q |
100 |
ataaactgatatatcatatgtgaacctcaaaataattaaagattcaagt |
148 |
Q |
| |
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|||| |||||||||||||||| ||||||| |||||||||| |||||||| |
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| T |
25016766 |
ataagctgatatatcatatgtaaacctcacaataattaaacattcaagt |
25016718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 160
Target Start/End: Complemental strand, 5912727 - 5912673
Alignment:
| Q |
106 |
tgatatatcatatgtgaacctcaaaataattaaagattcaagttattaatcaaat |
160 |
Q |
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|||||||| |||| ||||||||||||||||| ||||||||| |||| ||||||| |
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| T |
5912727 |
tgatatattatatatgaacctcaaaataattcaagattcaaattatatatcaaat |
5912673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 136
Target Start/End: Complemental strand, 10411794 - 10411764
Alignment:
| Q |
106 |
tgatatatcatatgtgaacctcaaaataatt |
136 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
10411794 |
tgatatatcatatgtgaacctcaaaataatt |
10411764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 150
Target Start/End: Complemental strand, 52750278 - 52750236
Alignment:
| Q |
108 |
atatatcatatgtgaacctcaaaataattaaagattcaagtta |
150 |
Q |
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||||||||||| ||||||||||| ||||| ||||||||||||| |
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| T |
52750278 |
atatatcatatatgaacctcaaactaattcaagattcaagtta |
52750236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 145
Target Start/End: Complemental strand, 29161202 - 29161162
Alignment:
| Q |
105 |
ctgatatatcatatgtgaacctcaaaataattaaagattca |
145 |
Q |
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|||||||||||||| ||||||||||||||||| ||| |||| |
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| T |
29161202 |
ctgatatatcatatatgaacctcaaaataattcaaggttca |
29161162 |
T |
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