View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2552_low_5 (Length: 555)
Name: NF2552_low_5
Description: NF2552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2552_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 22 - 379
Target Start/End: Complemental strand, 46239204 - 46238847
Alignment:
| Q |
22 |
aattgtcttcatcttccccactagactcattcaaatccacaaagttaggcatatcaaccttgacagacatattagtaacattatgctccacaaaaatctg |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
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| T |
46239204 |
aattgtcttcatcttccccactagactcattcaaatccacaaagttaggcatatcaaccttgacagacatattagtaacattatgctcaacaaaaatttg |
46239105 |
T |
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| Q |
122 |
tccatcaattccttcacccacagcatagatggcaatctcatctgcaatgttgtctagatcaacttgaacaaagtcattctcaatcctatccattttacac |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46239104 |
tccatcaattccttcacccacagcatagatggcaatctcatctgcaatgttgtctagatcaacttgaacaaagtcattctcaatcctatccattttacac |
46239005 |
T |
|
| Q |
222 |
cacagcctaatctcatggtcttgataaccccagctacacacaagttgcctaataacacctactttccaagcatctggaactaagtcagacacaagggttt |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46239004 |
cacagcctaatctcatggtcttgataaccccagctacaaacaagttgcctaataacacctactttccaagcatctggaactaagtcagacacaagggttt |
46238905 |
T |
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| Q |
322 |
gaaccccacctctgtagaatatggtttcttccctgacaaactctcccccatggtgaaa |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46238904 |
gaaccccacctctgtagaatatggtttcttccctgacaaactctcccccatggtgaaa |
46238847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 382
Target Start/End: Complemental strand, 23540366 - 23540229
Alignment:
| Q |
245 |
ataaccccagctacacacaagttgcctaataacacctactttccaagcatctggaactaagtcagacacaagggtttgaaccccacctctgtagaatatg |
344 |
Q |
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| T |
23540366 |
ataaccccagctcctaacaagttccttgataactgctactttccaagcatcagggtctatatcagacacaattgtttccacaccacctctatagaaaatg |
23540267 |
T |
|
| Q |
345 |
gtttcttccctgacaaactctcccccatggtgaaagat |
382 |
Q |
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|||| | ||| | |||||| || |||||||||||||| |
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| T |
23540266 |
gttttatgcctaaaaaactccccaccatggtgaaagat |
23540229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 22 - 379
Target Start/End: Original strand, 3455453 - 3455811
Alignment:
| Q |
22 |
aattgtcttcatcttccccactagactcattcaaatccacaaagttaggcatatcaaccttgacagacatattagtaacattatgctccacaaaaatctg |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
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| T |
3455453 |
aattgtcttcatcttccccactagactcattcaaatccacaaagttaggcatatcaaccttgacagacatattagtaacattatgctcaacaaaaatttg |
3455552 |
T |
|
| Q |
122 |
tccatcaattccttcacccacagcatagatggcaatctcatctgcaatgttgtctagatcaacttgaacaaagtcattctcaatcctatccattttacac |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3455553 |
tccatcaattccttcacccacagcatagatggcaatctcatctgcaatgctgtctagatcaacttgaacaaagtcattctcaatcctatccattttacac |
3455652 |
T |
|
| Q |
222 |
cacagcctaatctcatggtcttgataaccccagctacacacaagttgcctaataacacctactttccaagcatctggaactaagtcagacacaagggttt |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3455653 |
cacagcctaatctcatggtcttgataaccccagctacacacaagttgcctaataacacctactttccaagcatctggaactaagtcagacacaagggttt |
3455752 |
T |
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| Q |
322 |
gaa-ccccacctctgtagaatatggtttcttccctgacaaactctcccccatggtgaaa |
379 |
Q |
| |
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|| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3455753 |
taacccccacctctgtagaatacggtttcttccctgacaaactctcccccatggtgaaa |
3455811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 142; Significance: 3e-74; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 380 - 537
Target Start/End: Original strand, 39026187 - 39026343
Alignment:
| Q |
380 |
gatctcagaatagcaataaaacgccaaaatcgagtagtcctcatcatctaacatagaagctagcaacaatttatgctcatgttagacaattgactagaca |
479 |
Q |
| |
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||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39026187 |
gatctaaggatagcaataaa-cgccaaaatcgagtagtcctcatcatctaacatagaagctagcaacaatttatgctcatgttagacaattgactagaca |
39026285 |
T |
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| Q |
480 |
atccagattcaccacctaaatctcttttatttggcttcactatagaaactaccatgtt |
537 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39026286 |
atccagattcaccacctaaatctcttttatttggcttcactatagaaactaccatgtt |
39026343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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