View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2552_low_6 (Length: 514)
Name: NF2552_low_6
Description: NF2552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2552_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 17 - 508
Target Start/End: Complemental strand, 5486319 - 5485810
Alignment:
| Q |
17 |
aagcttgtctagttatcttttcattaatcaactcttaagcagtgacatctgtagccttaa------------------ctatatctgctgagcctatgaa |
98 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
5486319 |
aagcttgtctagttatcttttcattaatcaactcttaagcagtgacatctgtagccttaaaattgattaattgcataactatatctgctgagcctatgaa |
5486220 |
T |
|
| Q |
99 |
aactttaagcctactactaatttgttcaaagaaatatgagcgcagtttattgaaaaacacattttgacaatgaaattttgatgtacctagccagtagcac |
198 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5486219 |
aactttaagcctactactaattcgttcaaagaaatatgagcgcagtttattgaaaaacacattttgacaatgaaattttgatgtacctagccagtagcac |
5486120 |
T |
|
| Q |
199 |
ccgtgcatatacaaaatcaagtgggatgaatgaacttacaataatgttagaatgagcataaacaatgccaccgttatcagtattaatgcaaacatcggct |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
5486119 |
ccgtgcatatacaaaatcaagtgggatgaatgaacttacaataatgttagaatgagcataaataatgccaccgttatcagtattaatgcaaacatcggct |
5486020 |
T |
|
| Q |
299 |
ttatacccttgattgaaaagacgctcccacagatctcttgttgcagaagagacacagctgcttcgccctctcggtgataaattattcatcgccgcatact |
398 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5486019 |
ttatacccttcattgaaaagacgctcccacagatctcttgttgcagaagagacacagctgcttcgccctctcggtgataaattattcatcgccgcatact |
5485920 |
T |
|
| Q |
399 |
cgcaaggataaccggttgctgctgattgaggcgaaggaggtggtatcggaatgaatttcttagcattccggagtgatttgccatccatgttagccatcag |
498 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
5485919 |
cgcaaggataaccggttgctgctgatcgaggcgaaggaggtggtatcggaatgaatttcttagcattccggagtgattttccatccatgttagccatcag |
5485820 |
T |
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| Q |
499 |
cctatgcttc |
508 |
Q |
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| T |
5485819 |
cttatgcttc |
5485810 |
T |
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