View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2552_low_8 (Length: 486)

Name: NF2552_low_8
Description: NF2552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2552_low_8
NF2552_low_8
[»] chr1 (3 HSPs)
chr1 (310-350)||(4018214-4018254)
chr1 (57-93)||(42106984-42107020)
chr1 (180-231)||(42107109-42107160)
[»] chr5 (3 HSPs)
chr5 (55-93)||(4381795-4381833)
chr5 (55-93)||(38734625-38734663)
chr5 (62-92)||(41982469-41982499)
[»] chr3 (3 HSPs)
chr3 (55-93)||(30442386-30442424)
chr3 (64-93)||(25750829-25750858)
chr3 (55-92)||(54449780-54449817)
[»] chr6 (2 HSPs)
chr6 (55-92)||(23126784-23126821)
chr6 (56-89)||(32803117-32803150)
[»] chr7 (1 HSPs)
chr7 (191-231)||(9417272-9417312)
[»] chr4 (1 HSPs)
chr4 (55-87)||(53142124-53142156)


Alignment Details
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 350
Target Start/End: Complemental strand, 4018254 - 4018214
Alignment:
Q  310 tacaaaaactacactttagagtttcaattttaacaaaatca 350  Q
    ||||||||||||||||||||| ||||| |||||||||||||    
T  4018254 tacaaaaactacactttagagcttcaactttaacaaaatca 4018214  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 93
Target Start/End: Original strand, 42106984 - 42107020
Alignment:
Q  57 caaccacaaatgataaatatttagacacactcacatc 93  Q
    |||||||||||||||||||||| ||||||||||||||    
T  42106984 caaccacaaatgataaatatttggacacactcacatc 42107020  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 42107109 - 42107160
Alignment:
Q  180 tgagtgtgggtaaatatttatcatttgtggctgtgtttagaaaagagtttct 231  Q
    |||||||| ||||||||||||||||||| | |||||||| | ||||||||||    
T  42107109 tgagtgtgtgtaaatatttatcatttgtagttgtgtttaaagaagagtttct 42107160  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 93
Target Start/End: Complemental strand, 4381833 - 4381795
Alignment:
Q  55 cacaaccacaaatgataaatatttagacacactcacatc 93  Q
    |||||| |||||||||||||||||||| |||||||||||    
T  4381833 cacaactacaaatgataaatatttagatacactcacatc 4381795  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 93
Target Start/End: Original strand, 38734625 - 38734663
Alignment:
Q  55 cacaaccacaaatgataaatatttagacacactcacatc 93  Q
    |||||| | ||||||||||||||||||||||||||||||    
T  38734625 cacaactataaatgataaatatttagacacactcacatc 38734663  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 92
Target Start/End: Original strand, 41982469 - 41982499
Alignment:
Q  62 acaaatgataaatatttagacacactcacat 92  Q
    |||||||||||||||||||||||||||||||    
T  41982469 acaaatgataaatatttagacacactcacat 41982499  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 93
Target Start/End: Complemental strand, 30442424 - 30442386
Alignment:
Q  55 cacaaccacaaatgataaatatttagacacactcacatc 93  Q
    |||||||||||||||||||||||||| | ||||||||||    
T  30442424 cacaaccacaaatgataaatatttagccgcactcacatc 30442386  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 93
Target Start/End: Original strand, 25750829 - 25750858
Alignment:
Q  64 aaatgataaatatttagacacactcacatc 93  Q
    ||||||||||||||||||||||||||||||    
T  25750829 aaatgataaatatttagacacactcacatc 25750858  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 92
Target Start/End: Original strand, 54449780 - 54449817
Alignment:
Q  55 cacaaccacaaatgataaatatttagacacactcacat 92  Q
    |||||||| |||||||||||||||||||||| ||||||    
T  54449780 cacaaccataaatgataaatatttagacacattcacat 54449817  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 92
Target Start/End: Original strand, 23126784 - 23126821
Alignment:
Q  55 cacaaccacaaatgataaatatttagacacactcacat 92  Q
    ||||| |||||||||||||||||||| |||||||||||    
T  23126784 cacaatcacaaatgataaatatttaggcacactcacat 23126821  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 89
Target Start/End: Complemental strand, 32803150 - 32803117
Alignment:
Q  56 acaaccacaaatgataaatatttagacacactca 89  Q
    ||||| ||||||||||||||||||||||||||||    
T  32803150 acaactacaaatgataaatatttagacacactca 32803117  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 9417272 - 9417312
Alignment:
Q  191 aaatatttatcatttgtggctgtgtttagaaaagagtttct 231  Q
    ||||||||||||||||||| |||||||| | ||||||||||    
T  9417272 aaatatttatcatttgtggttgtgtttatagaagagtttct 9417312  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 87
Target Start/End: Original strand, 53142124 - 53142156
Alignment:
Q  55 cacaaccacaaatgataaatatttagacacact 87  Q
    |||||||| ||||||||||||||||||||||||    
T  53142124 cacaaccataaatgataaatatttagacacact 53142156  T

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