View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2553_high_2 (Length: 505)
Name: NF2553_high_2
Description: NF2553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2553_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Complemental strand, 2161196 - 2160791
Alignment:
| Q |
1 |
attttatttatgtcacggcaaaaataaagtgtgaacatgaaaagaataacaaacaagttagatcagccttgtctgaggtatttcttgaaacattataaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
2161196 |
attttatttatgtcacggcaaaaataaagtgtgaacatgaaaagaataacaaacaagttagatcagccttgtctaaggtatttcttgaaacattatcaag |
2161097 |
T |
|
| Q |
101 |
tgcaagtttgtgaaggagattccaagattccctcgtttgtgcagcatcagggaaacgatagaaacatgtaaagtgtcatccaggtcaataaaatttgatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2161096 |
tgcaagtttgtgaaggagattccaagattcactcgtttgtgcagcatcagggaaacgatagaaacatgtaaagtgtcatccaggtcaataaaatttgatg |
2160997 |
T |
|
| Q |
201 |
agtgccattgtagcgaccattcaaaacccaccaattcttctcattctgtcaagtgcaaatgctgcatcgaatccgaatcccaaactcaaccttatctcct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2160996 |
agtgccattgtagcgaccattcaaaacccaccgattcttctcattctgtcaagtgcaaatgctgcatcgaatccgaatcccaaactcaaccttatctcct |
2160897 |
T |
|
| Q |
301 |
caattttgctggcatataccaaagtctcacacacaaaaatactcccagttggtacgtccaaatgaggtcttgggctacccacccaaatccggaagctcca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
2160896 |
caattttgctggcatataccaaagtctcacacacaaaaatactcccagttggtacgtccaaatgaggtcttgggtt----acccaaatccggaagctcca |
2160801 |
T |
|
| Q |
401 |
gctggaaaaa |
410 |
Q |
| |
|
|||||||||| |
|
|
| T |
2160800 |
gctggaaaaa |
2160791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 405 - 492
Target Start/End: Complemental strand, 2160748 - 2160661
Alignment:
| Q |
405 |
gaaaaatactcaccattctgattttgtaatgccctcaatggatttcttatgttgctatatgggttaggtgtctctcattattgtgcct |
492 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2160748 |
gaaaaatactcaccattctggttttgtaatgccctcaatgaatttcttatgttgctatatgggttaggtgtctatcattattgtgcct |
2160661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University