View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2553_high_3 (Length: 475)
Name: NF2553_high_3
Description: NF2553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2553_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 16 - 459
Target Start/End: Original strand, 2660378 - 2660823
Alignment:
| Q |
16 |
ataacatcaatgctatatgtc-gagaggttttcatgcaaattttcataaattatacaggttttcactccaattgctaactag----catgcgaagcacca |
110 |
Q |
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| T |
2660378 |
ataacatcaatgctatatgtctgagaggttttcatgcaaattttcataaataatacaggttttcactccaattgctaactagctagcatgcgaagcacca |
2660477 |
T |
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| Q |
111 |
tcaccatttcaaatcttggtacccaataaatacacttattgaaatgtttatgttatggtatgcaacttcataagcattgaaacattcaatagattcagag |
210 |
Q |
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| T |
2660478 |
tcaccatttcaaatcttggtacccaaaaaatacacttattgaaatgtttatgttatggtatgcaacttcataagcattgaaacattcaatagattcagag |
2660577 |
T |
|
| Q |
211 |
tgtaaccctactcatgtagtacatacttaactaatgcaaccaaccaaacacacatagtaccacctactctgtttccaaaaaataaacatacaacctactc |
310 |
Q |
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|||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2660578 |
tgtaaccctactcatgcagtacatacttaaccaatgaaaccaaccaaacacacatagtaccacctactctgtttccaaaaaataaacatacaacctactc |
2660677 |
T |
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| Q |
311 |
cccctgcataaatattcggtttcatttgtagatttgtatcccacaagaactataccaaaacaccactccaatttcacttcactagggtagaatttcttat |
410 |
Q |
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| T |
2660678 |
cccctgcataaatattcggtttcatttgtagatttgtatcccacaagaattataccaaaacaccactccaatttcacttcactacggtagagtttcttat |
2660777 |
T |
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| Q |
411 |
cttcttccttttctcacaaattcatcttttagatctaaattctttttca |
459 |
Q |
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| T |
2660778 |
cttct---ttttctcacaaattcatcttttagatctaaattctttttca |
2660823 |
T |
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Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 113 - 192
Target Start/End: Complemental strand, 43661034 - 43660953
Alignment:
| Q |
113 |
accatttcaaatcttggtaccca--ataaatacacttattgaaatgtttatgttatggtatgcaacttcataagcattgaaa |
192 |
Q |
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| T |
43661034 |
accatttcaaatctaggtgcccataataaccacacttattgaaatgtttatgttatggtatgcagcttcataagcattgaaa |
43660953 |
T |
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