View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2553_low_1 (Length: 528)

Name: NF2553_low_1
Description: NF2553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2553_low_1
NF2553_low_1
[»] chr6 (3 HSPs)
chr6 (18-523)||(21480884-21481382)
chr6 (244-454)||(19700851-19701071)
chr6 (244-342)||(766903-767001)
[»] chr2 (5 HSPs)
chr2 (244-523)||(26661184-26661464)
chr2 (275-454)||(6049616-6049796)
chr2 (242-283)||(26667111-26667152)
chr2 (203-240)||(35729106-35729143)
chr2 (242-286)||(6051977-6052021)
[»] scaffold0500 (1 HSPs)
scaffold0500 (239-325)||(358-444)
[»] chr4 (3 HSPs)
chr4 (275-453)||(13893921-13894100)
chr4 (244-296)||(20856391-20856443)
chr4 (203-239)||(40049550-40049586)
[»] chr3 (1 HSPs)
chr3 (240-485)||(15762179-15762435)
[»] chr1 (4 HSPs)
chr1 (275-359)||(44305833-44305917)
chr1 (242-350)||(22893466-22893574)
chr1 (249-391)||(29845297-29845439)
chr1 (412-454)||(22893647-22893689)
[»] chr7 (7 HSPs)
chr7 (275-358)||(13331874-13331957)
chr7 (275-358)||(13342789-13342872)
chr7 (416-516)||(13331704-13331804)
chr7 (416-516)||(13342619-13342719)
chr7 (243-286)||(13323815-13323858)
chr7 (187-230)||(22707193-22707236)
chr7 (203-232)||(22689772-22689801)
[»] chr5 (4 HSPs)
chr5 (275-358)||(5672345-5672428)
chr5 (416-516)||(5672175-5672275)
chr5 (242-271)||(21635659-21635688)
chr5 (242-271)||(21643906-21643935)
[»] scaffold0586 (2 HSPs)
scaffold0586 (242-359)||(9280-9397)
scaffold0586 (412-454)||(9462-9504)
[»] chr8 (4 HSPs)
chr8 (245-454)||(10637313-10637534)
chr8 (245-359)||(32718167-32718281)
chr8 (412-454)||(32718060-32718102)
chr8 (197-238)||(11923007-11923048)


Alignment Details
Target: chr6 (Bit Score: 398; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 18 - 523
Target Start/End: Original strand, 21480884 - 21481382
Alignment:
Q  18 aggcacatgtctgtttcggttttgtagatctgcagaatataggttgtgatggtggacttttgtttagatatgaagatggtgaagtgttgtggtatgggtg 117  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21480884 aggcacatgtctgttttggttttgtagatctgcagaatataggttgtgatggtggacttttgtttagatatgaagatggtgaagtgttgtggtatgggtg 21480983  T
Q  118 ggtcaatctctctgaattctatcgcacactctcagtcacacacgttagagaggagnnnnnnnngttgcataattaaggcttaaattgtgcaacattgcac 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||| ||    
T  21480984 ggtcaatctctctgaattctatcgcacactctcagtcacacacgttagagaggagaaaaaaaagttgcataattaaggcttaaattgtgcaacattgtac 21481083  T
Q  218 atgttagaaaaacccataaaaatcttagggggtgtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttg 317  Q
    ||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  21481084 atgttagaaaaacccataaa--------ggggtgtttgtttgagggttacaaaaataattcctaggaatttaaggctggaattgaatattgctttgtttg 21481175  T
Q  318 gtagatgggaataacacaaatatgccaaggaatacatttttctcataaaagtcttttacccacgttca-ccccatgttctacccatttttcctgtctttt 416  Q
    ||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  21481176 gtagatgggaataacacaaatataccaaggaatacatttttctcaggaaagtcttttacccatgttcacccccatgttctacccatttttcctgtctttt 21481275  T
Q  417 attcccatgagatagcatgggaaagttttattcccagggaataaaaaccatgatctccaacaaaatacctctcctacccttgccattctcgctattcttt 516  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||    
T  21481276 attcccctgagatagcatgggaaagttttattcccagagaataaaaaccatgatctccaacaaaatacctcttctacccttgccattcctgctattcttt 21481375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 244 - 454
Target Start/End: Original strand, 19700851 - 19701071
Alignment:
Q  244 agggggtgtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgcc 343  Q
    ||||||||||||||||||||| | |||||||||||| |||||||||||||||||||| || ||| ||||||||||||  ||||||  ||||||||||| |    
T  19700851 agggggtgtttgtttgagggtaataaaaataattccaaggaatctaaggctggaattaaacattcctttgtttggtaagtgggaaccacacaaatatgtc 19700950  T
Q  344 aaggaatacatttttctcataaaagtcttttacccacgtt----ca------ccccatgttctacccatttttcc-tgtcttttattcccatgagatagc 432  Q
     ||||||||| ||||| ||  |||| | | ||||||||||    ||      ||||| |||| |||| ||||||| |  |||||||||||| ||||||||    
T  19700951 caggaatacaattttcccaggaaagccatctacccacgttttcccatttcttccccacgttc-acccttttttccatcccttttattcccaagagatagc 19701049  T
Q  433 atgggaaagttttattcccagg 454  Q
     |||||||||||||||||||||    
T  19701050 ttgggaaagttttattcccagg 19701071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 342
Target Start/End: Complemental strand, 767001 - 766903
Alignment:
Q  244 agggggtgtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgc 342  Q
    |||||| ||||||||||| ||||||| |||| || ||| |||||||||| || |||| | |||| || ||||||||||||| || ||| | ||||||||    
T  767001 agggggcgtttgtttgagagttacaataatagtttctatgaatctaaggatgaaattaagtattcctctgtttggtagatgagagtaagaaaaatatgc 766903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 244 - 523
Target Start/End: Original strand, 26661184 - 26661464
Alignment:
Q  244 agggggtgtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgcc 343  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26661184 aggggatgtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgcc 26661283  T
Q  344 aaggaatacatttttctcataaaagtcttttacccacgttc-accccatgttctacccatttttcctgtcttttattcccatgagatagcatgggaaagt 442  Q
    |||||||||||||||| ||  ||||||||||||||||||||  ||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  26661284 aaggaatacatttttcccaggaaagtcttttacccacgttctcccccacgttctacccatttttcctgtctttcattccaatgagatagcatgggaaagt 26661383  T
Q  443 tttattcccagggaataaaaaccatgatctccaacaaaatacctctcctacccttgccattctcgctattctttttctctg 523  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  26661384 tttatttccagggaataaaaaccatgatctccaacaaaatacctcttctacccttgccattcccgctattctttttctctg 26661464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 275 - 454
Target Start/End: Original strand, 6049616 - 6049796
Alignment:
Q  275 attcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgccaaggaatacatttttctcataaaagtctttt 374  Q
    |||||||||||||||||||||||||| || |||||| ||||||||||||||||| |||| ||||||||| ||||||||||||||| ||  ||||    |     
T  6049616 attcctaggaatctaaggctggaattaaagattgctatgtttggtagatgggaaaaacaaaaatatgcctaggaatacatttttcccaggaaagcagctc 6049715  T
Q  375 acccacgttc-accccatgttctacccatttttcctgtcttttattcccatgagatagcatgggaaagttttattcccagg 454  Q
     |||||||||  ||||| || | ||  |||||| || ||||||||||||||  |||||| ||||||| |||||||||||||    
T  6049716 ccccacgttctcccccacgtcccacatattttttctctcttttattcccatctgatagcttgggaaacttttattcccagg 6049796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 283
Target Start/End: Complemental strand, 26667152 - 26667111
Alignment:
Q  242 ttagggggtgtttgtttgagggttacaaaaataattcctagg 283  Q
    |||||||| ||||||||||||||||||||| | |||||||||    
T  26667152 ttagggggcgtttgtttgagggttacaaaatttattcctagg 26667111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 35729143 - 35729106
Alignment:
Q  203 tgtgcaacattgcacatgttagaaaaacccataaaaat 240  Q
    ||||||| ||||||||||||||| ||||||||||||||    
T  35729143 tgtgcaatattgcacatgttagacaaacccataaaaat 35729106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 242 - 286
Target Start/End: Complemental strand, 6052021 - 6051977
Alignment:
Q  242 ttagggggtgtttgtttgagggttacaaaaataattcctaggaat 286  Q
    |||||||||||||||||||||||| ||||| | ||||| ||||||    
T  6052021 ttagggggtgtttgtttgagggtttcaaaacttattccaaggaat 6051977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0500 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 239 - 325
Target Start/End: Complemental strand, 444 - 358
Alignment:
Q  239 atcttagggggtgtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgg 325  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  444 atcttagggggtgtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgg 358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 275 - 453
Target Start/End: Complemental strand, 13894100 - 13893921
Alignment:
Q  275 attcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgccaaggaatacatttttctcataaaagtctttt 374  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||||||| |||| ||||||||| ||||||||||||||| ||  ||||    |     
T  13894100 attcctaggaatctaaggctggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgcctaggaatacatttttcccaggaaagcagctc 13894001  T
Q  375 acccacgttc-accccatgttctacccatttttcctgtcttttattcccatgagatagcatgggaaagttttattcccag 453  Q
     |||||||||  ||||| |||| ||  |||||| || ||||||||||||||  |||||| ||||||| ||||||||||||    
T  13894000 ccccacgttctcccccacgttccacatattttttctctcttttattcccatctgatagcttgggaaacttttattcccag 13893921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 244 - 296
Target Start/End: Original strand, 20856391 - 20856443
Alignment:
Q  244 agggggtgtttgtttgagggttacaaaaataattcctaggaatctaaggctgg 296  Q
    |||||||||||| |||||||||| ||||||| |||||||||||||||||||||    
T  20856391 agggggtgtttgattgagggttagaaaaatagttcctaggaatctaaggctgg 20856443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 203 - 239
Target Start/End: Complemental strand, 40049586 - 40049550
Alignment:
Q  203 tgtgcaacattgcacatgttagaaaaacccataaaaa 239  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  40049586 tgtgcaatattgcacatgttagacaaacccataaaaa 40049550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 240 - 485
Target Start/End: Complemental strand, 15762435 - 15762179
Alignment:
Q  240 tcttagggggtgtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaata 339  Q
    |||||||| ||||||||| |||||||| || || |||||  ||||||||||||||||||| ||||||| ||||||||||||| |||| |  |||||||||    
T  15762435 tcttagggtgtgtttgttagagggttaaaacaaaaattctcaggaatctaaggctggaatcgaatattcctttgtttggtaggtgggtaccacacaaata 15762336  T
Q  340 tgccaaggaatacatttttctcataaaagtcttttacccacgttc-----------accccatgttctacccatttttcctgtcttttattcccatgaga 428  Q
    |||| ||||||||||||||| ||  |||||  |  ||||||||||            ||||| |||| ||| ||||||| |  ||| ||||||||||| |    
T  15762335 tgcctaggaatacatttttcccaggaaagtaatacacccacgttctcccccattttcccccacgttcaacctatttttcatcccttctattcccatgaaa 15762236  T
Q  429 tagcatgggaaagttttattcccagggaataaaaaccatgatctccaacaaaatacc 485  Q
    |||| |||||||| |||||||||| |||||  |||||||||||| ||| ||||||||    
T  15762235 tagcttgggaaagatttattcccatggaatggaaaccatgatcttcaataaaatacc 15762179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 6e-26; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 275 - 359
Target Start/End: Original strand, 44305833 - 44305917
Alignment:
Q  275 attcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgccaaggaatacatttttc 359  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||||||| |||| ||||||||| | |||||||||||||    
T  44305833 attcctaggaatctaaggctggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgcctaagaatacatttttc 44305917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 242 - 350
Target Start/End: Original strand, 22893466 - 22893574
Alignment:
Q  242 ttagggggtgtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatg 341  Q
    |||||||||||||||||||| ||   |||||||||||| |||||||||||| ||||||| || ||| ||||||||||||  ||||||  |||||||||||    
T  22893466 ttagggggtgtttgtttgagagtagtaaaaataattccaaggaatctaaggttggaattaaacattcctttgtttggtaagtgggaaccacacaaatatg 22893565  T
Q  342 ccaaggaat 350  Q
     ||||||||    
T  22893566 tcaaggaat 22893574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 249 - 391
Target Start/End: Original strand, 29845297 - 29845439
Alignment:
Q  249 gtgtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgccaagga 348  Q
    |||||||||| ||||||||||||||||||   |||||  ||||| || |||| |||||| ||||||||||||||| |||| |||  ||||||||  ||||    
T  29845297 gtgtttgtttaagggttacaaaaataattttaaggaaagtaaggttgaaattaaatattcctttgtttggtagattggaacaaccaaaatatgcttagga 29845396  T
Q  349 atacatttttctcataaaagtcttttacccacgttcaccccat 391  Q
    ||| ||||| ||||  |||||| || ||||||||||| |||||    
T  29845397 ataaattttactcaggaaagtcattcacccacgttcatcccat 29845439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 412 - 454
Target Start/End: Original strand, 22893647 - 22893689
Alignment:
Q  412 cttttattcccatgagatagcatgggaaagttttattcccagg 454  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  22893647 cttttattcccatgagatagcttgggaaagttttattcccagg 22893689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 275 - 358
Target Start/End: Complemental strand, 13331957 - 13331874
Alignment:
Q  275 attcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgccaaggaatacattttt 358  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||||||  ||||||| ||||| ||||||||||||||    
T  13331957 attcctaggaatctaaggctggaattgaatatttctttatttggtagatgggaaccacacaaaaatgcccaggaatacattttt 13331874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 275 - 358
Target Start/End: Complemental strand, 13342872 - 13342789
Alignment:
Q  275 attcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgccaaggaatacattttt 358  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||||||  ||||||| ||||  ||||||||||||||    
T  13342872 attcctaggaatctaaggctggaattgaatatttctttatttggtagatgggaaccacacaaaaatgctcaggaatacattttt 13342789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 416 - 516
Target Start/End: Complemental strand, 13331804 - 13331704
Alignment:
Q  416 tattcccatgagatagcatgggaaagttttattcccagggaataaaaaccatgatctccaacaaaatacctctcctacccttgccattctcgctattctt 515  Q
    ||||||||||| ||||| ||||||||||| ||||||||| | | ||| ||||||||| ||| |||| |||  |  | |||||||||||| ||||||||||    
T  13331804 tattcccatgaaatagcttgggaaagtttcattcccaggaattgaaacccatgatcttcaataaaaaaccatttttgcccttgccattcccgctattctt 13331705  T
Q  516 t 516  Q
    |    
T  13331704 t 13331704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 516
Target Start/End: Complemental strand, 13342719 - 13342619
Alignment:
Q  416 tattcccatgagatagcatgggaaagttttattcccagggaataaaaaccatgatctccaacaaaatacctctcctacccttgccattctcgctattctt 515  Q
    ||||||||||| ||||| ||||||||||| ||||||||| | | ||| ||||||||| ||| |||| |||  |  | |||||| ||||| ||||||||||    
T  13342719 tattcccatgaaatagcttgggaaagtttcattcccaggaattgaaacccatgatcttcaataaaaaaccatttttgcccttgtcattcccgctattctt 13342620  T
Q  516 t 516  Q
    |    
T  13342619 t 13342619  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 286
Target Start/End: Original strand, 13323815 - 13323858
Alignment:
Q  243 tagggggtgtttgtttgagggttacaaaaataattcctaggaat 286  Q
    ||||||||||||||||||||||||||||| | ||||| ||||||    
T  13323815 tagggggtgtttgtttgagggttacaaaatttattcccaggaat 13323858  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 22707236 - 22707193
Alignment:
Q  187 taattaaggcttaaattgtgcaacattgcacatgttagaaaaac 230  Q
    ||||||||||||||  |||||||||||||||| |||||||||||    
T  22707236 taattaaggcttaagctgtgcaacattgcacaggttagaaaaac 22707193  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 232
Target Start/End: Original strand, 22689772 - 22689801
Alignment:
Q  203 tgtgcaacattgcacatgttagaaaaaccc 232  Q
    ||||||||||||||||||||||||||||||    
T  22689772 tgtgcaacattgcacatgttagaaaaaccc 22689801  T

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Target: chr5 (Bit Score: 56; Significance: 6e-23; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 275 - 358
Target Start/End: Complemental strand, 5672428 - 5672345
Alignment:
Q  275 attcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgccaaggaatacattttt 358  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||||||  ||||||| ||||  ||||||||||||||    
T  5672428 attcctaggaatctaaggctggaattgaatatttctttatttggtagatgggaaccacacaaaaatgctcaggaatacattttt 5672345  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 516
Target Start/End: Complemental strand, 5672275 - 5672175
Alignment:
Q  416 tattcccatgagatagcatgggaaagttttattcccagggaataaaaaccatgatctccaacaaaatacctctcctacccttgccattctcgctattctt 515  Q
    ||||||||||| ||||| ||||||||||| ||||||||| | | ||| ||||||||| ||| |||| |||  |  | |||||| ||||| ||||||||||    
T  5672275 tattcccatgaaatagcttgggaaagtttcattcccaggaattgaaacccatgatcttcaataaaaaaccatttttgcccttgtcattcccgctattctt 5672176  T
Q  516 t 516  Q
    |    
T  5672175 t 5672175  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 271
Target Start/End: Original strand, 21635659 - 21635688
Alignment:
Q  242 ttagggggtgtttgtttgagggttacaaaa 271  Q
    ||||||||||||||||||||||||||||||    
T  21635659 ttagggggtgtttgtttgagggttacaaaa 21635688  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 271
Target Start/End: Original strand, 21643906 - 21643935
Alignment:
Q  242 ttagggggtgtttgtttgagggttacaaaa 271  Q
    ||||||||||||||||||||||||||||||    
T  21643906 ttagggggtgtttgtttgagggttacaaaa 21643935  T

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Target: scaffold0586 (Bit Score: 54; Significance: 9e-22; HSPs: 2)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 242 - 359
Target Start/End: Original strand, 9280 - 9397
Alignment:
Q  242 ttagggggtgtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatg 341  Q
    |||||||||||||||||||||||   |||||||||| | |||||||||||| ||||||| || ||| ||||||||||||| ||||||  |||||||||||    
T  9280 ttagggggtgtttgtttgagggtagtaaaaataatttcaaggaatctaaggttggaattaaacattcctttgtttggtaggtgggaaccacacaaatatg 9379  T
Q  342 ccaaggaatacatttttc 359  Q
     | |||||| || |||||    
T  9380 tccaggaatgcaattttc 9397  T

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Target: scaffold0586; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 412 - 454
Target Start/End: Original strand, 9462 - 9504
Alignment:
Q  412 cttttattcccatgagatagcatgggaaagttttattcccagg 454  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  9462 cttttattcccatgagatagcttgggaaagttttattcccagg 9504  T

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Target: chr8 (Bit Score: 53; Significance: 4e-21; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 245 - 454
Target Start/End: Original strand, 10637313 - 10637534
Alignment:
Q  245 gggggtgtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgcca 344  Q
    ||||||||||||||||||||   |||||||||||| |||||||||||| ||||||| || ||| ||||||||||||  ||||||  ||||||||||| |     
T  10637313 gggggtgtttgtttgagggtagtaaaaataattccaaggaatctaaggttggaattaaacattcctttgtttggtaagtgggaaccacacaaatatgtcc 10637412  T
Q  345 aggaatacatttttctcataaaagtcttttacccacgtt------ca------ccccatgttctacccatttttcc-tgtcttttattcccatgagatag 431  Q
    |||||| || ||||| ||  |||| | | ||||||||||      ||      ||||| |||| |||| ||||||| |  ||||||||||||||||||||    
T  10637413 aggaatgcaattttcccaggaaagccatctacccacgttttcccccatttcttccccacgttc-acccttttttccatcccttttattcccatgagatag 10637511  T
Q  432 catgggaaagttttattcccagg 454  Q
    | |||||||||||||||||||||    
T  10637512 cttgggaaagttttattcccagg 10637534  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 245 - 359
Target Start/End: Complemental strand, 32718281 - 32718167
Alignment:
Q  245 gggggtgtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgcca 344  Q
    ||||||||||||||||||||   |||||||||||| |||||||||||| ||||||| || ||| ||||||||||||  ||||||  ||||||||||| |     
T  32718281 gggggtgtttgtttgagggtagtaaaaataattccaaggaatctaaggttggaattaaacattcctttgtttggtaagtgggaaccacacaaatatgtct 32718182  T
Q  345 aggaatacatttttc 359  Q
    |||||| || |||||    
T  32718181 aggaatgcaattttc 32718167  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 412 - 454
Target Start/End: Complemental strand, 32718102 - 32718060
Alignment:
Q  412 cttttattcccatgagatagcatgggaaagttttattcccagg 454  Q
    |||||||||||||||||| || |||||||||||||||||||||    
T  32718102 cttttattcccatgagatggcttgggaaagttttattcccagg 32718060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 238
Target Start/End: Complemental strand, 11923048 - 11923007
Alignment:
Q  197 ttaaattgtgcaacattgcacatgttagaaaaacccataaaa 238  Q
    |||| |||||||| ||||||||||||||| ||||||||||||    
T  11923048 ttaacttgtgcaatattgcacatgttagacaaacccataaaa 11923007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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