View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2553_low_10 (Length: 285)
Name: NF2553_low_10
Description: NF2553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2553_low_10 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 8e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 32335771 - 32336021
Alignment:
| Q |
1 |
gaaccaagtgtcatccacattctctactcatccttgtggccaaagccaattttctcattccctgtcatttcttcatttccttagccacttgtccttcttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32335771 |
gaaccaagtgtcatccacattctctactcatccttgtggccaaagccaattttctcattccctgtcatttcttcatttccttagccacttgtccttcttc |
32335870 |
T |
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| Q |
101 |
ttaattactctaacaaactagataaagctcttctcnnnnnnnnnnnnnnnnnnnnnnggtaataataattggtctaatttctatgcaacgagttttattt |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32335871 |
ttaattactctaacaaactagataaagctcttctcttttttcattttcgttttttttggtaataataattggtctaatttctatgcaacgaattttattt |
32335970 |
T |
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| Q |
201 |
cctttgccccccacaattaaaactcatttattgtatttcaccttaaaaaga |
251 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32335971 |
cctttgccccccacaattaaaactcatttattgtatttcaccttaaaaaga |
32336021 |
T |
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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 285
Target Start/End: Original strand, 44855547 - 44855587
Alignment:
| Q |
245 |
aaaaagacaataacttagtagtatggaccctcacatatttc |
285 |
Q |
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| T |
44855547 |
aaaaagacaataacttaagagtatggaccctcacatatttc |
44855587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 246
Target Start/End: Complemental strand, 29842794 - 29842756
Alignment:
| Q |
208 |
cccccacaattaaaactcatttattgtatttcaccttaa |
246 |
Q |
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| T |
29842794 |
cccccacaattaaaactcatttatagtatttcatcttaa |
29842756 |
T |
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