View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2553_low_11 (Length: 278)
Name: NF2553_low_11
Description: NF2553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2553_low_11 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 28132190 - 28132459
Alignment:
| Q |
1 |
cacagagacaagaaaaagtacagaaaccaataaatgttcaactcagtttgaaggcaggcaggttatgcaagactcggtagcagaatccgtagctaagttt |
100 |
Q |
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| T |
28132190 |
cacagagacaagaaaaagtacagaaaccaataaatgttcaactcagtttgaaggcaggcaggttatgcaagactcggtagcagaatccgtagctaagttt |
28132289 |
T |
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| Q |
101 |
tacaacacaggagttgttaagaaactgttcataaatctc-aaaaattggcatgctaaaaattgtttagatgccacaaaggaagtacatacatcacaagtg |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
28132290 |
tacaacacaggagttgttaagaaactgttcataaatctcaaaaaattggcatgctaaaaattgtttag---------tggaagtacatacatcacaagtg |
28132380 |
T |
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| Q |
200 |
aaagctacaagcatattgtttttgatattatataaagtaggatacacacaaaaaggaaaaacaaatcactttggcatac |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
28132381 |
aaagctacaagcatattgtttttgatattatataaagtaggatacacacaaacaagaaaaacaaatcactttggcatac |
28132459 |
T |
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