View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2553_low_12 (Length: 275)
Name: NF2553_low_12
Description: NF2553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2553_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 37045573 - 37045832
Alignment:
| Q |
1 |
cttcatttttaaccattcttgtttgaattcagctgaatca---tcactattggtaacttgagagaaatatctaaaaggtgctctaacttgtacattatac |
97 |
Q |
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| T |
37045573 |
cttcatttttaaccattcttgtttgaattcagctgaatcatcatcactattggtaacttgagagaaatatctaaaaggtgctctaacttgtacattatac |
37045672 |
T |
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| Q |
98 |
ttcttacagaaaggaacccaaaacttagcaaatttagaagcttccaaaagaccatagaaggtaaaaacagaacagccatcatcagaaacataacaagcta |
197 |
Q |
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| T |
37045673 |
ttcttacagaaaggaacccaaaacttagcaaatttagaagcttccaaaagaccatagaaggtaaaaacagaacagccatcatcagaaacataacaagcta |
37045772 |
T |
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| Q |
198 |
gcttattagctggataatcaagtgccaatagagacaaaacagtgttcaatgtgatgattg |
257 |
Q |
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| T |
37045773 |
gcttattagctggataatcaagtgccaatagagacaaaacagtgttcaatgtgatgattg |
37045832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 37036233 - 37036492
Alignment:
| Q |
1 |
cttcatttttaaccattcttgtttgaattcagctgaatca---tcactattggtaacttgagagaaatatctaaaaggtgctctaacttgtacattatac |
97 |
Q |
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| T |
37036233 |
cttcatttttaaccattcttgtttgaattcagctgaatcatcatcactattggtaacttgagagaaatatctaaaaggtgctctaacttgtatattatac |
37036332 |
T |
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| Q |
98 |
ttcttacagaaaggaacccaaaacttagcaaatttagaagcttccaaaagaccatagaaggtaaaaacagaacagccatcatcagaaacataacaagcta |
197 |
Q |
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| T |
37036333 |
ttcttacagaaaggtacccaaaacttggcaaatttagaagcttccaaaagaccatagaaggtaaaaacagaacagccatcatcagaaacataacaagcta |
37036432 |
T |
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| Q |
198 |
gcttattagctggataatcaagtgccaatagagacaaaacagtgttcaatgtgatgattg |
257 |
Q |
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| T |
37036433 |
gcttattagctggataatcaagagccaatagagacaaaacagtgttcaatgtgatgattg |
37036492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 60 - 225
Target Start/End: Original strand, 37011605 - 37011770
Alignment:
| Q |
60 |
agaaatatctaaaaggtgctctaacttgtacattatacttcttacagaaaggaacccaaaacttagcaaatttagaagcttccaaaagaccatagaaggt |
159 |
Q |
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| T |
37011605 |
agaaatatctaaatggtgctctacattgtacattgtacttcttacaaaatggtacccaaatttcagcaaatttggcagcttccacaagagcatagaaggt |
37011704 |
T |
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| Q |
160 |
aaaaacagaacagccatcatcagaaacataacaagctagcttattagctggataatcaagtgccaa |
225 |
Q |
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| T |
37011705 |
aagagttgaacacccatcatcagaaacataacaagctagcttattagcaggataatcaagtgccaa |
37011770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 68 - 225
Target Start/End: Original strand, 37027703 - 37027860
Alignment:
| Q |
68 |
ctaaaaggtgctctaacttgtacattatacttcttacagaaaggaacccaaaacttagcaaatttagaagcttccaaaagaccatagaaggtaaaaacag |
167 |
Q |
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|||||||||||||||||||| ||||| || |||||||| ||||| ||||||| ||||||||||||||| ||||||| ||| |||| ||||||| | | |
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| T |
37027703 |
ctaaaaggtgctctaacttgcacattgtatttcttacaaaaaggtacccaaagcttagcaaatttagaggcttccacaagggcataaaaggtaagaggtg |
37027802 |
T |
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| Q |
168 |
aacagccatcatcagaaacataacaagctagcttattagctggataatcaagtgccaa |
225 |
Q |
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| T |
37027803 |
aacatccatcatcagaaacatagcatgctagcttgtttgctggataatcaagtgccaa |
37027860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 62 - 257
Target Start/End: Complemental strand, 17656384 - 17656189
Alignment:
| Q |
62 |
aaatatctaaaaggtgctctaacttgtacattatacttcttacagaaaggaacccaaaacttagcaaatttagaagcttccaaaagaccatagaaggtaa |
161 |
Q |
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|||||||||||||| || |||| ||||||||| ||||| ||||| || || |||||| || |||||||| ||||||| |||| |||||||| | | |
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| T |
17656384 |
aaatatctaaaaggagccctaatttgtacattgtactttttacaaaatggtacccaatgttttgcaaattttgaagctttgtgaagagcatagaagatta |
17656285 |
T |
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| Q |
162 |
aaacagaacagccatcatcagaaacataacaagctagcttattagctggataatcaagtgccaatagagacaaaacagtgttcaatgtgatgattg |
257 |
Q |
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| T |
17656284 |
gaggagaacaaccatcatcagaaacgtaacaagctagcttgtgagatgggtaatcaagtgctaatagtgataaaacagtgtttattgtgatgattg |
17656189 |
T |
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