View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2553_low_13 (Length: 250)
Name: NF2553_low_13
Description: NF2553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2553_low_13 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 43033271 - 43033031
Alignment:
| Q |
10 |
ataatactacaaatactttagtgagtgtgctagctacaaaatgttaaagagtgatgaagcactaacacggaaatggataccaaacactgacatcgacact |
109 |
Q |
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| T |
43033271 |
ataatactacaaatactttagtgagtgtgctagctgcaaaatgttaaagagtaatgaagcactaacacggaaatggataccaaacactgacatcgacact |
43033172 |
T |
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| Q |
110 |
gaacgtagacactgaaaataatttaggaaaatgtaagtaattgaatgtaaccatttaacactgaaccaacacaagtaggacaccggacacaaattcgatc |
209 |
Q |
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| T |
43033171 |
gaacgtagacactgaaaataatttaggaaaatgtaagtaattgaatgtaaccatttaacactgaaccaacacaagtaggacaccggacacaaattcgatc |
43033072 |
T |
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| Q |
210 |
tgaagggttggtactacataagtaaaaacaaaccaaaacaa |
250 |
Q |
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| T |
43033071 |
tgaagggttggtactgcataagtaaaaacaaaccaaaacaa |
43033031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 10 - 222
Target Start/End: Complemental strand, 43048679 - 43048479
Alignment:
| Q |
10 |
ataatactacaaatactttagtgagtgtgctagctacaaaatgttaaagagtgatgaagcactaacacggaaatggataccaaacactgacatcgacact |
109 |
Q |
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| T |
43048679 |
ataacactacaaatacaacagtgagtgtgctagctacaaaatgttgaagagtattgtagcactaacacagaaatggataccaaacactgacatcgac--- |
43048583 |
T |
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| Q |
110 |
gaacgtagacactgaaaataatttaggaaaatgtaagtaattgaatgtaaccatttaacactgaaccaacacaagtaggacaccggacacaaattcgatc |
209 |
Q |
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| T |
43048582 |
-cacgtagacaccgga--------aggaaaatgtaagtaatttaatgtaaccatttgacaccgaaccgacatatataagataccggacacaagttcgatc |
43048492 |
T |
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| Q |
210 |
tgaagggttggta |
222 |
Q |
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| T |
43048491 |
tgaagtgttggta |
43048479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 159
Target Start/End: Original strand, 16852070 - 16852117
Alignment:
| Q |
112 |
acgtagacactgaaaataatttaggaaaatgtaagtaattgaatgtaa |
159 |
Q |
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| T |
16852070 |
acgtagacactgacaataatttaagaaaatgtaagtgattgaatgtaa |
16852117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 163
Target Start/End: Original strand, 30289807 - 30289856
Alignment:
| Q |
114 |
gtagacactgaaaataatttaggaaaatgtaagtaattgaatgtaaccat |
163 |
Q |
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| T |
30289807 |
gtagacactggtaataatttaagaaaatgtgagtaattgaatgtaaccat |
30289856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 162
Target Start/End: Complemental strand, 2468537 - 2468487
Alignment:
| Q |
112 |
acgtagacactgaaaataatttaggaaaatgtaagtaattgaatgtaacca |
162 |
Q |
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| T |
2468537 |
acgtagacattggtaataatttaagaaaatggaagtaattgaatgtaacca |
2468487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 162
Target Start/End: Complemental strand, 27131737 - 27131687
Alignment:
| Q |
112 |
acgtagacactgaaaataatttaggaaaatgtaagtaattgaatgtaacca |
162 |
Q |
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| T |
27131737 |
acgtagacattggtaataatttaagaaaatggaagtaattgaatgtaacca |
27131687 |
T |
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