View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2553_low_5 (Length: 361)
Name: NF2553_low_5
Description: NF2553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2553_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 32309098 - 32308747
Alignment:
| Q |
1 |
atctcctcattttcttgatgatgaagatgaagagaaagagaagacttgtttaggaagttattgagttggttggaattgtaactgaatatgaatggttagt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32309098 |
atctcctcattttcttgatgatgaagatgaagagaaagagaagacttgtttaggaagttattgagttggttggaattgtaactgaatatgaatggttagt |
32308999 |
T |
|
| Q |
101 |
tagcatattgattgatactctttttatataggaaaggaactagctaggaatggactcactagggtatccttgtatttgagattaatcttcttaaggggta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| | |
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| T |
32308998 |
tagcatattgattgatactctttttatataggaaaggaactagctaggaatggactcactagggcatccttgtatttgagattaatcttcttaacgggca |
32308899 |
T |
|
| Q |
201 |
agtaa--ttc--------------ctcttctgattattaaaattcaaaccctgaattcttcatttatggactcaatcaatcaaaataatggattgatggg |
284 |
Q |
| |
|
||||| ||| | ||| ||||||||||||||||||| |||| |||||||||| |||| ||| ||||||||||| ||||||||| |
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| T |
32308898 |
agtaatcttctaacatatgcacctttattcgtattattaaaattcaaacccgcaatttttcatttatgaactcgatctatcaaaataataaattgatggg |
32308799 |
T |
|
| Q |
285 |
ttatggaattactattacgagttgttaaatttgtttcgtcgatagtatacaa |
336 |
Q |
| |
|
|||||||||||||| | |||||||| |||| ||||| || |||||||||||| |
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| T |
32308798 |
ttatggaattactactgcgagttgtcaaatatgttttgttgatagtatacaa |
32308747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 32799968 - 32800142
Alignment:
| Q |
1 |
atctcctcattttcttgatgatgaagatgaagagaaagagaagacttgtttaggaagttattgagttggttggaattgtaactgaatatgaatggttagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32799968 |
atctcctcattttcttgatgatgaagatgaagagaaagagaagacttgtttaggaagttattgagttggttggaattgtaactgaatatgaatggttagt |
32800067 |
T |
|
| Q |
101 |
tagcatattgattgatactctttttatataggaaaggaactagctaggaatggactcactagggtatccttgtat |
175 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
32800068 |
tagcatattgattgatactctttttatataggaaaggaactagctaggaatggactcattagggtatccttgtat |
32800142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 32815359 - 32815665
Alignment:
| Q |
1 |
atctcctcattttcttgatgatgaagatgaa--------gagaaagagaagacttgtttaggaagttattgagttggttggaattgtaactgaatatgaa |
92 |
Q |
| |
|
||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
32815359 |
atctcctcattttcttgatgatgaagaagaacaagagaagaaaaagagaagacttgtttaggaagttattgggttggttggaattgtaactgaatctgaa |
32815458 |
T |
|
| Q |
93 |
tggtt----agttagcatattgattgatactctttttatataggaaaggaactagc---taggaatggactcactagggtatccttgtat---------t |
176 |
Q |
| |
|
||||| |||||||||||| || ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
32815459 |
tggttggttagttagcatattaat----actctctttatataggaaaggaactaggaaataggaatggactcactagggtatccttgtatctagtaatca |
32815554 |
T |
|
| Q |
177 |
tgagattaatcttcttaaggggtaagtaattcctc--------------ttctgattattaaaattcaaaccctgaattcttcatttatggactcaatca |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
32815555 |
tgagattaatcttcttaaggggtaagtaattcttcttctactacctttgttctgatgattaaaattcaaaccctcaattcttcatttatggactcaatca |
32815654 |
T |
|
| Q |
263 |
atcaaaataat |
273 |
Q |
| |
|
||||||||||| |
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|
| T |
32815655 |
atcaaaataat |
32815665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 32565737 - 32565887
Alignment:
| Q |
1 |
atctcctcattttcttgatgatgaagatgaa--------gagaaagagaagacttgtttaggaagttattgagttggttggaattgtaactgaatatgaa |
92 |
Q |
| |
|
||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32565737 |
atctcctcattttcttgatgatgaagaagaacaagagaagaaaaagagaagacttgtttaggaagttattgagttggttggaattgtaactgaatctgaa |
32565836 |
T |
|
| Q |
93 |
tggttagttagcatattgattgatactctttttatataggaaaggaactag |
143 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
32565837 |
tggtttgttagcatattgattgatactttttttatataggaaaggaactag |
32565887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 225 - 350
Target Start/End: Original strand, 32807509 - 32807638
Alignment:
| Q |
225 |
aattcaaaccctgaattcttcatttatggactcaatcaatcaaaataatg-gattgatgggttatggaattactattacgagttgtt---aaatttgttt |
320 |
Q |
| |
|
||||||||||| ||||||||| |||||||| ||||||||||||| ||| |||||||||||||| ||||||||||||||||||||| |||| | ||| |
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|
| T |
32807509 |
aattcaaacccgcaattcttcacatatggacttaatcaatcaaaattatgagattgatgggttatagaattactattacgagttgttgttaaatctattt |
32807608 |
T |
|
| Q |
321 |
cgtcgatagtatacaagtttcttaaacaat |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
32807609 |
cgtcgatagtatacaagtttcttaaacaat |
32807638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 32806922 - 32807097
Alignment:
| Q |
1 |
atctcctcattttcttgatgatgaagatgaa--------gagaaagagaagacttgtttaggaagttattgagttggttggaat----tgtaactgaata |
88 |
Q |
| |
|
||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
32806922 |
atctcctcattttcttgatgatgaagaagaacaagagaagaaaaagagaagacttgtttaggaagttattgagttggttggaattgcatgcaactgaat- |
32807020 |
T |
|
| Q |
89 |
tgaatggttagttagcatattgattgatactctttttatataggaaaggaactagctaggaatggactcactagggtatccttgt |
173 |
Q |
| |
|
| |||||||||||||| ||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||| |
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|
| T |
32807021 |
ggtttggttagttagcat----attgatactctttttatataggaaatgaa----ctaggaattgactcactagggtatccttgt |
32807097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 29 - 134
Target Start/End: Complemental strand, 32305351 - 32305256
Alignment:
| Q |
29 |
gaagagaaagagaagacttgtttaggaagttattgagttggttggaattgtaactgaatatgaatggttagttagcatattgattgatactctttttata |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||| |||| ||||||||||||| |
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|
| T |
32305351 |
gaagagaaagagaagacttgtttaggaagttattgggtttgttggaattgtaact------gaatggttagttagcat----attgctactctttttata |
32305262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 242 - 336
Target Start/End: Original strand, 32800235 - 32800329
Alignment:
| Q |
242 |
cttcatttatggactcaatcaatcaaaataatggattgatgggttatggaattactattacgagttgttaaatttgtttcgtcgatagtatacaa |
336 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||||||||||| |||||||| |||| |||| |||| ||||||||| ||||||||||| |
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|
| T |
32800235 |
cttcacttatggactcggtcaatcaaaataatggattgatgggttactaaattactaccacgaattgtcaaatatgtttcgtcaatagtatacaa |
32800329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 218 - 328
Target Start/End: Original strand, 32807281 - 32807391
Alignment:
| Q |
218 |
ttattaaaattcaaaccctgaattcttcatttatggactcaatcaatcaaaataatggattgatgggttatggaattactattacgagttgttaaatttg |
317 |
Q |
| |
|
||||||||||| |||| | | ||||||| |||||||||| |||||| ||||||||||| ||||| | || || ||||||||||||||||| |||| || |
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|
| T |
32807281 |
ttattaaaatttaaactcgcatttcttcacttatggactcggtcaatctaaataatggatcgatggataattgagttactattacgagttgtcaaatatg |
32807380 |
T |
|
| Q |
318 |
tttcgtcgata |
328 |
Q |
| |
|
|||| ||||| |
|
|
| T |
32807381 |
cttcggcgata |
32807391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 293 - 336
Target Start/End: Original strand, 32787461 - 32787504
Alignment:
| Q |
293 |
ttactattacgagttgttaaatttgtttcgtcgatagtatacaa |
336 |
Q |
| |
|
|||||| ||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
32787461 |
ttactactacaagttgttaaatatgtttcgtcgatagtatacaa |
32787504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 330 - 361
Target Start/End: Original strand, 32815670 - 32815701
Alignment:
| Q |
330 |
tatacaagtttcttaaacaatatccttaaaac |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
32815670 |
tatacaagtttcttaaacaatatccttaaaac |
32815701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 301252 - 300919
Alignment:
| Q |
1 |
atctcctcattttcttgatgatgaagatgaagagaaagagaagacttgtttaggaagttattgagttggttggaattgtaactgaatatgaatggttagt |
100 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||| |
|
|
| T |
301252 |
atcttctcattttcttgatgatgaagaagaagagaaagagaagacttgtttaggaagttattgggtttgttggaattgtaactgaat------ggttagt |
301159 |
T |
|
| Q |
101 |
tagcatattgattgatactctttttatataggaaaggaactagctaggaatggactcactaggg-tatccttgtatttgagattaatcttcttaaggggt |
199 |
Q |
| |
|
|||||| | ||| |||||||||||||||| || |||||||||||||||||||| || || || | ||||||||||||||||||||| | |
|
|
| T |
301158 |
tagcatcat-attcatactctttttatata----------ta--taggaatggactcactaggggtaaccatg-agatgagattaatcttcttaaggg-t |
301074 |
T |
|
| Q |
200 |
aagtaattcctcttctg--------------attattaaaattcaaaccctgaattcttcatttatggactcaatcaatcaaaataatggattgatgggt |
285 |
Q |
| |
|
|| |||||| |||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| || |
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|
| T |
301073 |
aactaattcttcttctagcacctttgttttcattattaaaattcaaaaatgcaattcttcacttatggactcaatcaatcaaaataatggattgatgagt |
300974 |
T |
|
| Q |
286 |
tatggaattactattacgagttgttaaatttgtttcgtcgatagtatacaagttt |
340 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
300973 |
tatggaattactattacgagttgttaaatctgtttcgtcgatagtatacaagttt |
300919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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