View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2553_low_6 (Length: 333)
Name: NF2553_low_6
Description: NF2553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2553_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 11 - 317
Target Start/End: Original strand, 49770471 - 49770777
Alignment:
| Q |
11 |
cagagaggaaaggagtagcagattttttacaagaagtactttttcttagcttcattagactctatgacttgttttgcacttttcacctttaatagaagac |
110 |
Q |
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| T |
49770471 |
cagagaggaaaggagtagcagattttttacaagaagtactttttcttagcttcattagactctatgacttgttttgcacttttcacctttaatagaagac |
49770570 |
T |
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| Q |
111 |
actatactcatctctttatatgacaggtaacttcaagaaaagatcaagaacagtactggtcaaataaagataagccatatacctttatcactgttagaga |
210 |
Q |
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| T |
49770571 |
actatacttatctctttatatgacaggtaacttcaagaaaagatcaagaacagtactggtcaaataaagataagccatatacctttatcactgttagaga |
49770670 |
T |
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| Q |
211 |
attcgctgaagaatttcagttgtttcatgtcggtcaaaaactcggtgatgaacttggtactccatttgatgcctccaaaggccaccctgccgttttaacc |
310 |
Q |
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| T |
49770671 |
attcgctgaagaatttcagttgtttcatgtcggtcaaaaactcggtgatgaacttggtactccatttgatgcctccaaaggccaccctgccgttttaacc |
49770770 |
T |
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| Q |
311 |
aaaaaca |
317 |
Q |
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| T |
49770771 |
aaaaaca |
49770777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 148 - 296
Target Start/End: Complemental strand, 3826021 - 3825872
Alignment:
| Q |
148 |
aaaagatca-agaacagtactggtcaaataaagataagccatatacctttatcactgttagagaattcgctgaagaatttcagttgtttcatgtcggtca |
246 |
Q |
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| T |
3826021 |
aaaagatcagagaacagtattggtcaaataaagatgggccatatccctttatcactgtcagagaatttgatgaagcttttcagttgtttcaaattggtcg |
3825922 |
T |
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| Q |
247 |
aaaactcggtgatgaacttggtactccatttgatgcctccaaaggccacc |
296 |
Q |
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| T |
3825921 |
aaaactcgaggacaaacttgctacaccatttgatacctccagaggccacc |
3825872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 43460106 - 43460065
Alignment:
| Q |
133 |
acaggtaacttcaagaaaagatcaagaacagtactggtcaaa |
174 |
Q |
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| T |
43460106 |
acaggttacttcaaggaaagatcaagaacaatactggtcaaa |
43460065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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