View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2553_low_9 (Length: 289)
Name: NF2553_low_9
Description: NF2553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2553_low_9 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 39581226 - 39580938
Alignment:
| Q |
1 |
aacttttcttcttcaattctcatcattacaatttccctcgcttggattatataatccccaacacacatacttcatcaattgcggatcagattttgatgtt |
100 |
Q |
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| T |
39581226 |
aacttttcttcttcaattctcatcattacaattttcctcgctcggattatataatccccaacacacatacttcatcaattgcggatcagattttgatgtt |
39581127 |
T |
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| Q |
101 |
actgaaagtaacaacgtttatattggtgaatcaaaccctacttatccgaaaacagttttcagcaaaagctccaaagtaacaagtcaatcatcatcactat |
200 |
Q |
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| T |
39581126 |
actgaaagtaacaacgtttatattggtgaatcaaaccctacttatccgaaaacagttttcagcaaaagctccaaagtaacaagtcaatcatcatcactat |
39581027 |
T |
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| Q |
201 |
caacaccactttcacctctctaccaaacagcaattatattcccttccaagtctttctacgaattcaaaaccgtaccaaacaacacttac |
289 |
Q |
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| T |
39581026 |
caacaccactttcacctctctaccaaacagcaattatattcccttccaaatctttctacgaattcaaaaccgtaccaaacaacacttac |
39580938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 3 - 190
Target Start/End: Complemental strand, 39544828 - 39544644
Alignment:
| Q |
3 |
cttttcttcttcaattctcatcattacaatttccctcgcttggattatataatccccaacacacatacttcatcaattgcggatcagattttgatgttac |
102 |
Q |
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| T |
39544828 |
cttttcttcttcaattcgcatcattacaatttccctcactcggat---acgatcaccaagacacatacttcatcaattgcggatcagatattgacgtgaa |
39544732 |
T |
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| Q |
103 |
tgaaagtaacaacgtttatattggtgaatcaaaccctacttatccgaaaacagttttcagcaaaagctccaaagtaacaagtcaatca |
190 |
Q |
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| T |
39544731 |
tgaaaataacaacctttatattggtgaatcaaaccctacttacccaaaaacaagtttcagaaaaagctccaaagtaacaagtcaatca |
39544644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 3 - 289
Target Start/End: Complemental strand, 39522038 - 39521764
Alignment:
| Q |
3 |
cttttcttcttcaattctcatcattacaatttccctcgcttggattatataatccccaacacacatacttcatcaattgcggatcagattttgatgttac |
102 |
Q |
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| T |
39522038 |
ctttttttcttcaattctcatcattacaattcccctcactcggat---acgatcctcaagacacatacttcatcaattgtggatcagatatcgacgtgaa |
39521942 |
T |
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| Q |
103 |
tgaaagtaacaacgtttatattggtgaatcaaaccctacttatccgaaaacagttttcagcaaaag---ctccaaagtaacaagtcaatcatcatcacta |
199 |
Q |
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| T |
39521941 |
tgaaaataacaacctttatattggtgaatcaaaccatgcttacccgaaaaaattattcagcgaaagtaactccaaagtaacaagtca---atcaccagtg |
39521845 |
T |
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| Q |
200 |
tcaacaccactttcacctctctaccaaacagcaattatattcccttccaagtctttctacgaattcaaaaccgtaccaaacaacacttac |
289 |
Q |
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| T |
39521844 |
tc---------ttcacctctcaaccaaacagcaagaattttcctttccaattcttcctatgaattcaaaaccgttccaagcaacacttac |
39521764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 97 - 285
Target Start/End: Complemental strand, 39525441 - 39525265
Alignment:
| Q |
97 |
tgttactgaaagtaacaacgtttatattggtgaatcaaaccctacttatccgaaaacagttttcagcaaaagctccaaagtaacaagtcaatcatcatca |
196 |
Q |
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| T |
39525441 |
tgttactgaaagtaataaagtttatattggggaatcaaaccccaactaccctaaaacaagtttcagcaaaagctccatagaaaccagtcaatcat----- |
39525347 |
T |
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| Q |
197 |
ctatcaacaccactttcacctctctaccaaacagcaattatattcccttccaagtctttctacgaattcaaaaccgtaccaaacaacac |
285 |
Q |
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| T |
39525346 |
-------cagtgccttcacctctctaccaaacagcaaggatatttcattccgaatctttatacgagttcaaaaccgtaccaaacaacac |
39525265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 137
Target Start/End: Complemental strand, 39576624 - 39576552
Alignment:
| Q |
65 |
acatacttcatcaattgcggatcagattttgatgttactgaaagtaacaacgtttatattggtgaatcaaacc |
137 |
Q |
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| T |
39576624 |
acatacttcatcaattgtggatcagatatcgacgtgaatgaaaataagaatctttatattggtgaatcaaacc |
39576552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 285
Target Start/End: Complemental strand, 39544636 - 39544561
Alignment:
| Q |
210 |
tttcacctctctaccaaacagcaattatattcccttccaagtctttctacgaattcaaaaccgtaccaaacaacac |
285 |
Q |
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| T |
39544636 |
tttcacctctctaccaaacagcaaggatattccattccgagtcttcctatgaattttctaccataccaaacaacac |
39544561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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