View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2554_high_10 (Length: 288)
Name: NF2554_high_10
Description: NF2554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2554_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 132 - 211
Target Start/End: Complemental strand, 34998009 - 34997930
Alignment:
| Q |
132 |
gaaaagggaaactgggtgggtgggggcacaaaacgttttcatgcaattcgcgagtttgtttctcgcaccatatagcataa |
211 |
Q |
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| T |
34998009 |
gaaaagggaaactgggtgggtggggacacaaagcattttcgtgcaattcgtgagtttgtttctcgcaccatttagcataa |
34997930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 34998139 - 34998097
Alignment:
| Q |
1 |
gcagaagtattagcaacgttgataaattttaccactgacatgt |
43 |
Q |
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| T |
34998139 |
gcagaagtattagcaacgttgataaattttaccaccgacatgt |
34998097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 34450735 - 34450693
Alignment:
| Q |
1 |
gcagaagtattagcaacgttgataaattttaccactgacatgt |
43 |
Q |
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| T |
34450735 |
gcagaagtattagcaacgttgataaattttaccaccgacatgt |
34450693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 171
Target Start/End: Complemental strand, 34450604 - 34450565
Alignment:
| Q |
132 |
gaaaagggaaactgggtgggtgggggcacaaaacgttttc |
171 |
Q |
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| T |
34450604 |
gaaaaggaaaactgggtgggtgggggcacaaagcgttttc |
34450565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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