View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2554_high_13 (Length: 262)
Name: NF2554_high_13
Description: NF2554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2554_high_13 |
 | |
|
| [»] scaffold0001 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 20 - 255
Target Start/End: Complemental strand, 20052100 - 20051865
Alignment:
| Q |
20 |
taggggagtgtcaagaatgtgtgaattgtgtttcaagaaaaaccaatctttgtcttacataccctgtgagattcaccggtctaatgcccgataacacttc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20052100 |
taggggagtgtcaagaatgtgtgaattgtgtttcaagaaaaaccaatctttgtcttacataccctgtgagattcaccggtctaatgcccgataacacttc |
20052001 |
T |
|
| Q |
120 |
aagattgtccgttcgaggccaaagactatatcatgttttgagttgtgctacatggtcggagtatgttgttgttgatgtcaactaccttctcaaagtcgat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
20052000 |
aagattgtccgttcgaggccaaagactatatcatgttttgagttgtgctacatggtcggagtatgtcgttgttgatgtcaactaccttctcaaagtcgat |
20051901 |
T |
|
| Q |
220 |
ccaaccattaatcgagcttatgcaagtttcatctca |
255 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |
|
|
| T |
20051900 |
ccaaccattaatctagcttatgcaagtttcatctca |
20051865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 18 - 255
Target Start/End: Complemental strand, 506208 - 505971
Alignment:
| Q |
18 |
cataggggagtgtcaagaatgtgtgaattgtgtttcaagaaaaaccaatctttgtcttacataccctgtgagattcaccggtctaatgcccgataacact |
117 |
Q |
| |
|
|||||| |||||| ||||||||| |||||||||||| | ||||||||| | ||| | ||| | ||||||||||| || ||||||||||| ||||||||| |
|
|
| T |
506208 |
cataggcgagtgtgaagaatgtgagaattgtgtttctgggaaaaccaatttgtgtttgacacatcctgtgagattgactggtctaatgccagataacact |
506109 |
T |
|
| Q |
118 |
tcaagattgtccgttcgaggccaaagactatatcatgttttgagttgtgctacatggtcggagtatgttgttgttgatgtcaactaccttctcaaagtcg |
217 |
Q |
| |
|
||||| ||||| || |||||||||| | |||| |||||||||||||||||| |||||||||| ||||| || |||||| |||| |||||||| | ||| | |
|
|
| T |
506108 |
tcaaggttgtctgtccgaggccaaacattataccatgttttgagttgtgcttcatggtcggaatatgtggtggttgatatcaattaccttcttagagttg |
506009 |
T |
|
| Q |
218 |
atccaaccattaatcgagcttatgcaagtttcatctca |
255 |
Q |
| |
|
|||||| |||||||| ||||||||| |||||||||||| |
|
|
| T |
506008 |
atccaaacattaatctagcttatgctagtttcatctca |
505971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University