View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2554_high_22 (Length: 237)
Name: NF2554_high_22
Description: NF2554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2554_high_22 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 32664171 - 32664373
Alignment:
| Q |
18 |
ttgtcgtcattcctttatctaatagcggcggaaagcttcaatatgttgatgaggagggcaatggaggagggaaaattgacagtatacagatttgacatgg |
117 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32664171 |
ttgtcgtcattcctttatctaatagtggcggaaagcttcaatatgttgatgaggagggcaatggaggagggaaaattgacagtatacagatttgacatgg |
32664270 |
T |
|
| Q |
118 |
aggaagacatgttcacacacttacaatatgccaacgatacattgattattcgtgagaaaaagtggtcaaatatcataatcatcaaggtaaatttgcttct |
217 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
32664271 |
aggaagacatgttcacaaacttacaatatgccaacgatacattgattattcgtgagaaaaagtggtcaaatatcagaatcatcaaggtaaatttgcttct |
32664370 |
T |
|
| Q |
218 |
att |
220 |
Q |
| |
|
||| |
|
|
| T |
32664371 |
att |
32664373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 204
Target Start/End: Complemental strand, 27119947 - 27119878
Alignment:
| Q |
135 |
cacttacaatatgccaacgatacattgattattcgtgagaaaaagtggtcaaatatcataatcatcaagg |
204 |
Q |
| |
|
||||||||||||| |||| |||||||||||| |||| |||||||||| |||||||||||||| |||| |
|
|
| T |
27119947 |
cacttacaatatgtagacgacacattgattattggtgaaaaaaagtggtagaatatcataatcattaagg |
27119878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 23703605 - 23703395
Alignment:
| Q |
19 |
tgtcgtcattcctttatctaatagcggcggaaagcttcaatatgttgatgaggagggcaatggaggagggaaaattgacagtatacagatttgacatgga |
118 |
Q |
| |
|
||||||| ||||||||| |||| | || ||| |||| |||||||||||||||| |||| |||||||||||||||| |||| ||||| |||||||| || |
|
|
| T |
23703605 |
tgtcgtcgttcctttatttaattgtagcagaaggctttaatatgttgatgaggatggcagtggaggagggaaaattcacagaatacatatttgacaaggg |
23703506 |
T |
|
| Q |
119 |
ggaagacatgttcacacacttacaatatgccaacgatacattgattattcgtgagaaaaagtggtcaaatatcataatcatcaaggtaaatttgcttcta |
218 |
Q |
| |
|
||||||| | | ||||| |||||||||| ||||||||||||||||| |||| |||||||||| ||||||| ||| | |||| |||||| ||||| |
|
|
| T |
23703505 |
ggaagaccggctaacacatttacaatatgatgacgatacattgattattagtgaaaaaaagtggttgaatatcaaaattaaaaaggcaaatttacttctt |
23703406 |
T |
|
| Q |
219 |
tttgaggtaat |
229 |
Q |
| |
|
||||| ||||| |
|
|
| T |
23703405 |
tttgaagtaat |
23703395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 39293940 - 39294113
Alignment:
| Q |
18 |
ttgtcgtcattcctttatctaatagcggcggaaagcttcaatatgttgatgaggagggcaatggagg-agggaaaattgacagtatacagatttgacatg |
116 |
Q |
| |
|
|||||||| ||||||| ||||||||| |||||| ||||||||||||||||||||| | | |||||| ||| |||| |||| ||||| |||||||||| |
|
|
| T |
39293940 |
ttgtcgtcgttcctttttctaatagcagcggaagacttcaatatgttgatgaggagagtagtggaggtgggggcaattcacaggatacaaatttgacatg |
39294039 |
T |
|
| Q |
117 |
gaggaagacatgttcacacacttacaatatgccaacgatacattgattattcgtgagaaaaagtggtcaaatat |
190 |
Q |
| |
|
| |||||| | ||||| || ||| |||| ||| | |||| ||||||||| |||||||||||||||| ||||| |
|
|
| T |
39294040 |
ggggaagatcttttcactcatttagaatacgccgatgataacttgattattggtgagaaaaagtggtcgaatat |
39294113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University