View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2554_high_6 (Length: 366)
Name: NF2554_high_6
Description: NF2554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2554_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 16 - 347
Target Start/End: Original strand, 2653421 - 2653754
Alignment:
| Q |
16 |
atgaaggaaagagaagaacataggaagggagtagcaaacaaaagttatattgcaatttgaaatgaattaattttcatttaacagaaaatttaaagtcaca |
115 |
Q |
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| T |
2653421 |
atgaaggaaagagaagaacataggaagggagtagcaaacaaaagttatattgcaatttgaaatgaattaattttcatttaacagaaaatttaaagtcaca |
2653520 |
T |
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| Q |
116 |
aattgaagttacttagtctgttgtaatcattgattacatatccacaaaaaataaattgataaaatagaaataacatcaatctagctattccaattgagtt |
215 |
Q |
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| T |
2653521 |
aattgaagttacttagtctgttgtaatcattgattacatatccacaaaaaataaattgataaaatagaaataacatcaatctagctattccaattgagtt |
2653620 |
T |
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| Q |
216 |
ataaatgtttactgcttacataattaaaatcctaaatctaaaacatcaagtaaggatttgagaagatgcaatttgaagcaacattgagatatag--atat |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2653621 |
ataaatgtttactgcttacataattaaaatcctaaatctaaaacatcaagtaaggatttgagaagatgcaatttgaagcaacattgagatatagatatat |
2653720 |
T |
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| Q |
314 |
atgcacaagcaatatacataatctttgtttaaat |
347 |
Q |
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| T |
2653721 |
atgcacaagcaatatacagaatctttgtttaaat |
2653754 |
T |
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