View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2554_high_9 (Length: 299)
Name: NF2554_high_9
Description: NF2554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2554_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 20 - 284
Target Start/End: Original strand, 31264470 - 31264734
Alignment:
| Q |
20 |
tatttcgctccaatgcccacacttgacccatacactctaccatttttgctagagtgtactttgtttcttgaaacttagagaaagtatgaaaccctcattt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
31264470 |
tatttcgctccaatgcccacacttgacccatacactctaccatttttgctagagtgtactttatttcttgaaacttagagaaagtatgaaaccctcattt |
31264569 |
T |
|
| Q |
120 |
aattccatacctatcttcatccattgtagaaatatgaaaattgaaatcctttaaaacccatannnnnnnnnnnnatagcatgagacatacatgaataatt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
31264570 |
aattccatacctatcttcatccattgtagaaatatgaaaattgaaatcctttaaaacccatattttttgtttttatagcatgagacatacatgaataatt |
31264669 |
T |
|
| Q |
220 |
ttctatatttgacaagcttcttcattcaagttagtttcgttctcactatttctacacatgatttt |
284 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31264670 |
ttctatatttgacaagcttcttcattcaagttagtttcgttctcactatttctacacatgatttt |
31264734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 20 - 164
Target Start/End: Complemental strand, 22049568 - 22049424
Alignment:
| Q |
20 |
tatttcgctccaatgcccacacttgacccatacactctaccatttttgctagagtgtactttgtttcttgaaacttagagaaagtatgaaaccctcattt |
119 |
Q |
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|||||||||| |||||||||||| |||||||||| |||||||||| |||| |||||||| ||||| |||||||||||||||||| ||||||| |||||| |
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| T |
22049568 |
tatttcgctcaaatgcccacactcgacccatacattctaccatttctgctggagtgtaccttgttccttgaaacttagagaaagcatgaaactctcattc |
22049469 |
T |
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| Q |
120 |
aattccatacctatcttcatccattgtagaaatatgaaaattgaa |
164 |
Q |
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| T |
22049468 |
aattccaaaccaatcttcatccattgtagaaaaatgaacattgaa |
22049424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 20 - 164
Target Start/End: Complemental strand, 44359953 - 44359809
Alignment:
| Q |
20 |
tatttcgctccaatgcccacacttgacccatacactctaccatttttgctagagtgtactttgtttcttgaaacttagagaaagtatgaaaccctcattt |
119 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||| |||||||||| |||| |||||||| ||||| |||||||||||||||||| ||||||| |||||| |
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| T |
44359953 |
tatttcgctcaaatgcccacactcgacccatacattctaccatttctgctggagtgtaccttgttccttgaaacttagagaaagcatgaaactctcattc |
44359854 |
T |
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| Q |
120 |
aattccatacctatcttcatccattgtagaaatatgaaaattgaa |
164 |
Q |
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||||||| ||| |||||||||||||||||||| ||||| |||||| |
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| T |
44359853 |
aattccaaaccaatcttcatccattgtagaaaaatgaacattgaa |
44359809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 20 - 151
Target Start/End: Complemental strand, 13814718 - 13814587
Alignment:
| Q |
20 |
tatttcgctccaatgcccacacttgacccatacactctaccatttttgctagagtgtactttgtttcttgaaacttagagaaagtatgaaaccctcattt |
119 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||| |||||||||| |||| |||||||||||||| |||||||||||||||||| ||||||| | |||| |
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| T |
13814718 |
tatttcgctccaatgcccacactcgacccttacattctaccatttctgctggagtgtactttgttccttgaaacttagagaaagcatgaaactcccattc |
13814619 |
T |
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| Q |
120 |
aattccatacctatcttcatccattgtagaaa |
151 |
Q |
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||||||| ||| |||||||||||||||||||| |
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| T |
13814618 |
aattccaaaccaatcttcatccattgtagaaa |
13814587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 20 - 148
Target Start/End: Original strand, 12212874 - 12213003
Alignment:
| Q |
20 |
tatttcgctccaatgcccacacttgacccatacactctaccatttttgctagagtgtactttgtttcttgaaacttagagaaagtatg-aaaccctcatt |
118 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||||||| |||| |||||||| ||||| |||||||||||||||||| ||| |||| | |||| |
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| T |
12212874 |
tatttcgctccaatgcccacactcgacccatacattctaccatttctgctggagtgtaccttgttccttgaaacttagagaaagcatgaaaactcgcatt |
12212973 |
T |
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| Q |
119 |
taattccatacctatcttcatccattgtag |
148 |
Q |
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||||||| ||| ||||||||||||||||| |
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| T |
12212974 |
caattccaaaccaatcttcatccattgtag |
12213003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 157
Target Start/End: Original strand, 22145057 - 22145194
Alignment:
| Q |
20 |
tatttcgctccaatgcccacacttgacccatacactctaccatttttgctagagtgtactttgtttcttgaaacttagagaaagtatgaaaccctcattt |
119 |
Q |
| |
|
||||||||||||||||||||||| ||||||| || |||||||||| |||| || ||||| ||||| |||||||||||||||||| ||||||| | |||| |
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| T |
22145057 |
tatttcgctccaatgcccacactcgacccatgcattctaccatttctgctggactgtaccttgttccttgaaacttagagaaagcatgaaactcccattc |
22145156 |
T |
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| Q |
120 |
aattccatacctatcttcatccattgtagaaatatgaa |
157 |
Q |
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||||||| ||| |||||||||||||||||||| ||||| |
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| T |
22145157 |
aattccaaaccaatcttcatccattgtagaaaaatgaa |
22145194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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