View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2554_low_1 (Length: 539)
Name: NF2554_low_1
Description: NF2554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2554_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 118 - 460
Target Start/End: Original strand, 21055962 - 21056304
Alignment:
| Q |
118 |
tatttgtgtatgatcttccaccaaaatacaacaaaaactggcttaaaaacccaagatgcaaaactcatttatttgcttcagaagttgctattcatagagc |
217 |
Q |
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| T |
21055962 |
tatttgtgtatgatcttccaccaaaatacaacaaaaactggcttaaaaacccaagatgcaaaactcatttatttgcttcagaagttgctattcatagagc |
21056061 |
T |
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| Q |
218 |
tttattaacaagtgatgtaagaacttttgacccatatgaagctgattttttctttgtaccagtttacgtttcttgtaacttcagcaccgttaatggcttc |
317 |
Q |
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| T |
21056062 |
tttattaacaagtgatgtaagaacttttgacccatatgaagctgattttttctttgtaccagtttacgtttcttgtaacttcagcaccgttaatggcttc |
21056161 |
T |
|
| Q |
318 |
ccagcaattggtcatgcacgttcattgatttcttcagcagtgaaactcatctccaccgagtaccctttctggaaccgtagcacaggatcagaccatgtct |
417 |
Q |
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| T |
21056162 |
ccagcaattggtcatgcacgttcattgatttcttcagcagtgaaactcatctccaccgagtaccctttctggaaccgtagcacaggatcagaccatgtct |
21056261 |
T |
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| Q |
418 |
tcgtagcttcacatgatttcggttcttgtttccacaccctggt |
460 |
Q |
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| T |
21056262 |
tcgtagcttcacatgatttcggttcttgtttccacaccctggt |
21056304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 21055852 - 21055901
Alignment:
| Q |
8 |
acatcatcaaataacatcaacaataaaatcactttctcagtccttatcca |
57 |
Q |
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| T |
21055852 |
acatcatcaaataacatcaacaataaaatcactttctcaatccttatcca |
21055901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 147; Significance: 3e-77; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 158 - 376
Target Start/End: Complemental strand, 12172979 - 12172761
Alignment:
| Q |
158 |
gcttaaaaacccaagatgcaaaactcatttatttgcttcagaagttgctattcatagagctttattaacaagtgatgtaagaacttttgacccatatgaa |
257 |
Q |
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||||| |||| ||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||| || ||| |
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| T |
12172979 |
gcttacaaactcaagatgcaaaactcgtttatttgcttcaaaagttgaaattcatagagctttattaacaagtgatgttagaacttttgacccttacgaa |
12172880 |
T |
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| Q |
258 |
gctgattttttctttgtaccagtttacgtttcttgtaacttcagcaccgttaatggcttcccagcaattggtcatgcacgttcattgatttcttcagcag |
357 |
Q |
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| T |
12172879 |
gctgattttttctttgtagcaatttatgtttcttgtaacttcagcactgttaatggcttccctgcaattggtcatgcacgttcgttgatttcttcagtag |
12172780 |
T |
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| Q |
358 |
tgaaactcatctccaccga |
376 |
Q |
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| || |||||||||||||| |
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| T |
12172779 |
ttaatctcatctccaccga |
12172761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 177 - 436
Target Start/End: Complemental strand, 35417290 - 35417031
Alignment:
| Q |
177 |
aaaactcatttatttgcttcagaagttgctattcatagagctttattaacaagtgatgtaagaacttttgacccatatgaagctgattttttctttgtac |
276 |
Q |
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||||| ||||| ||||||||||||||||||||||| | || || || | ||||||||| |||||||||||||| |||||||||||||| |||||||| | |
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| T |
35417290 |
aaaacacatttgtttgcttcagaagttgctattcacaccgcattgttgaaaagtgatgtgagaacttttgacccttatgaagctgatttcttctttgttc |
35417191 |
T |
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| Q |
277 |
cagtttacgtttcttgtaacttcagcaccgttaatggcttcccagcaattggtcatgcacgttcattgatttcttcagcagtgaaactcatctccaccga |
376 |
Q |
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| T |
35417190 |
ctgtttatgtttcttgcaacttcagcacagttaatggttttccggcaattggacatgcccgtgctctcatttcctccgcggttgagctcgtctccaccga |
35417091 |
T |
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| Q |
377 |
gtaccctttctggaaccgtagcacaggatcagaccatgtcttcgtagcttcacatgattt |
436 |
Q |
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|| || || ||||| || |||| |||||| |||||||| || || ||||| |||||||| |
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| T |
35417090 |
atatccattttggaatcgaagcagaggatccgaccatgtttttgtcgcttctcatgattt |
35417031 |
T |
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