View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2554_low_12 (Length: 283)
Name: NF2554_low_12
Description: NF2554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2554_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 139; Significance: 9e-73; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 17 - 188
Target Start/End: Original strand, 9080955 - 9081126
Alignment:
| Q |
17 |
atatattgcttctatataaaatattaatcaaaaattaaatattatttgtttacttttcatttgtaatatgtattagttttggtaaagataaaatacnnnn |
116 |
Q |
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| T |
9080955 |
atatattgcttctatataaaatattaatcaaaaattaaatattatttgtttacttttcatttgtaatatgtattagttttggtaaagataaaatacaaaa |
9081054 |
T |
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| Q |
117 |
nnnggtaacaccaaaatcttatatcttcttatatattggcgaaaaaatgaattaattgacagaaaaaataat |
188 |
Q |
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| T |
9081055 |
aaaggtcacaccaaaatcttatatcttcttatatattggcgaaaaaatgaattaattgacagcaaaattaat |
9081126 |
T |
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Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 216 - 273
Target Start/End: Original strand, 9081222 - 9081279
Alignment:
| Q |
216 |
tattaattactttttgtgcaaaaatctactaaaaattgagttcatctacttgcctatg |
273 |
Q |
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| T |
9081222 |
tattaattactttttgtgcaaaaatctactaaaaattgagttcatctacttgcctatg |
9081279 |
T |
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