View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2554_low_13 (Length: 273)
Name: NF2554_low_13
Description: NF2554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2554_low_13 |
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| [»] chr6 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 13 - 273
Target Start/End: Original strand, 31264086 - 31264346
Alignment:
| Q |
13 |
aatatttgagggtttgattgagatgaagtcataacattgagatccataaatataaattattacttatcggataaattaccatctttccaatattacggag |
112 |
Q |
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| T |
31264086 |
aatatttgagggtttgattgagatgaagtcataacattgagatccataaatataaattattactcatcggataaattaccatctttccaatattacggag |
31264185 |
T |
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| Q |
113 |
atgctctattccatgtctttcaactttctttgaattcagacttctgttgagacaaatttgcatctgagtgttcttgtcacgtatgatattaacgactagt |
212 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31264186 |
atgctctattccatgtctttcaactttccttgaattcagacttctgttgcgacaaatttgcatttgagtgttcttgtcacgtatgatattaacgactagt |
31264285 |
T |
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| Q |
213 |
ttgagcgactcatcactgcctcttgggacttctgatgaacgttgtttgggtcttctatggc |
273 |
Q |
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| T |
31264286 |
ttgagcgactcatcactgcctcttgggacttctgatgaacgttgttttggtcttctatggc |
31264346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 150 - 273
Target Start/End: Complemental strand, 22049815 - 22049692
Alignment:
| Q |
150 |
agacttctgttgagacaaatttgcatctgagtgttcttgtcacgtatgatattaacgactagtttgagcgactcatcactgcctcttgggacttctgatg |
249 |
Q |
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|||| ||||||||||| ||||||||||||| ||||||||| |||||||| |||| ||| |||| |||||| |||| ||||||||||| || |||||||| |
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| T |
22049815 |
agacatctgttgagacgaatttgcatctgattgttcttgttgcgtatgatgttaatgaccagttcgagcgattcattactgcctcttgtgatttctgatg |
22049716 |
T |
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| Q |
250 |
aacgttgtttgggtcttctatggc |
273 |
Q |
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| T |
22049715 |
aacgttgttttggttttctttggc |
22049692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 39 - 273
Target Start/End: Original strand, 22144698 - 22144933
Alignment:
| Q |
39 |
agtcataacattgagatccataaatataaattattacttatcggataaattaccatctttccaatatt-acggagatgctctattccatgtctttcaact |
137 |
Q |
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||||||||||||| || ||||||||||||||||||||| ||||||||||| ||||||| |||| |||| ||||||||||||||||||| || ||||||| |
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| T |
22144698 |
agtcataacattgcgaaccataaatataaattattactcatcggataaatcaccatctgtccagtattgacggagatgctctattccacgtaattcaact |
22144797 |
T |
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| Q |
138 |
ttctttgaattcagacttctgttgagacaaatttgcatctgagtgttcttgtcacgtatgatattaacgactagtttgagcgactcatcactgcctcttg |
237 |
Q |
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| | ||||||| |||| | ||||||||| ||||||||||||| |||||| || |||||||| |||| | | |||| |||||||||||||||| |||||| |
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| T |
22144798 |
tcccttgaatttagacatttgttgagacgaatttgcatctgattgttctcgttgcgtatgatgttaatggccagttcgagcgactcatcactgtctcttg |
22144897 |
T |
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| Q |
238 |
ggacttctgatgaacgttgtttgggtcttctatggc |
273 |
Q |
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|| |||||||||||||||||| |||||||| |||| |
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| T |
22144898 |
tgatttctgatgaacgttgttttggtcttctttggc |
22144933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 39 - 265
Target Start/End: Original strand, 12212515 - 12212742
Alignment:
| Q |
39 |
agtcataacattgagatccataaatataaattattacttatcggataaattaccatctttccaatatt-acggagatgctctattccatgtctttcaact |
137 |
Q |
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|||||||||||||||| ||||||||||||||||||||| ||||||||||| | ||||| || | |||| ||||||||||||||||||| || ||||||| |
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| T |
12212515 |
agtcataacattgagaaccataaatataaattattactcatcggataaatcatcatctgtctagtattgacggagatgctctattccacgtaattcaact |
12212614 |
T |
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| Q |
138 |
ttctttgaattcagacttctgttgagacaaatttgcatctgagtgttcttgtcacgtatgatattaacgactagtttgagcgactcatcactgcctcttg |
237 |
Q |
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| | ||||||| |||| ||||||||||| ||||||||||||| |||||| || ||||||||||||| | | |||| ||||||||||| || | |||||| |
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| T |
12212615 |
tcccttgaatttagacatctgttgagacgaatttgcatctgattgttctcgttgcgtatgatattaatggccagttcgagcgactcattaccgtctcttg |
12212714 |
T |
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| Q |
238 |
ggacttctgatgaacgttgtttgggtct |
265 |
Q |
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| T |
12212715 |
tgatttctgatgaacattgttttggtct |
12212742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 39 - 273
Target Start/End: Complemental strand, 13815076 - 13814842
Alignment:
| Q |
39 |
agtcataacattgagatccataaatataaattattacttatcggataaattaccatctttccaatatt-acggagatgctctattccatgtctttcaact |
137 |
Q |
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|||||||||| ||||| |||||| |||||||||||||| ||| ||||||| ||||||| |||| |||| ||||||||||||||||||| || ||||||| |
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| T |
13815076 |
agtcataacactgagaaccataagtataaattattactcatcagataaatcaccatctatccagtattgacggagatgctctattccacgtaattcaact |
13814977 |
T |
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| Q |
138 |
ttctttgaattcagacttctgttgagacaaatttgcatctgagtgttcttgtcacgtatgatattaacgactagtttgagcgactcatcactgcctcttg |
237 |
Q |
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| | ||||||| |||| ||||||||||| ||||||||||||| |||||| || |||||||| ||| | | |||| ||||||||||| |||| |||||| |
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| T |
13814976 |
tcccttgaatttagacatctgttgagacgaatttgcatctgattgttctcgttgcgtatgatgttagtggccagttcgagcgactcattactgtctcttg |
13814877 |
T |
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| Q |
238 |
ggacttctgatgaacgttgtttgggtcttctatggc |
273 |
Q |
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|| || | ||||||||||||| |||||||| |||| |
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| T |
13814876 |
tga-tttttatgaacgttgttttggtcttctttggc |
13814842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 150 - 273
Target Start/End: Complemental strand, 44360200 - 44360077
Alignment:
| Q |
150 |
agacttctgttgagacaaatttgcatctgagtgttcttgtcacgtatgatattaacgactagtttgagcgactcatcactgcctcttgggacttctgatg |
249 |
Q |
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|||| ||||||||||| ||||||||||||| ||||||||| |||||||| |||| ||| |||| |||||| |||| ||||||||||| || |||||||| |
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| T |
44360200 |
agacatctgttgagacgaatttgcatctgattgttcttgttgcgtatgatgttaatgaccagttcgagcgattcattactgcctcttgtgatttctgatg |
44360101 |
T |
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| Q |
250 |
aacgttgtttgggtcttctatggc |
273 |
Q |
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|||||||||| ||| |||| |||| |
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| T |
44360100 |
aacgttgttttggttttctttggc |
44360077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 156 - 273
Target Start/End: Complemental strand, 15851109 - 15850992
Alignment:
| Q |
156 |
ctgttgagacaaatttgcatctgagtgttcttgtcacgtatgatattaacgactagtttgagcgactcatcactgcctcttgggacttctgatgaacgtt |
255 |
Q |
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|||||||||||||||||||||||| ||||||||| ||||||| |||| | |||| ||||||||||| |||| || |||| |||||| ||||||||| |
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| T |
15851109 |
ctgttgagacaaatttgcatctgattgttcttgttgtgtatgatgttaatggtgagttcgagcgactcattactgtcttttggaacttcttatgaacgtt |
15851010 |
T |
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| Q |
256 |
gtttgggtcttctatggc |
273 |
Q |
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|||| |||||||| |||| |
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| T |
15851009 |
gttttggtcttctttggc |
15850992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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