View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2554_low_15 (Length: 253)
Name: NF2554_low_15
Description: NF2554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2554_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 4006286 - 4006151
Alignment:
| Q |
18 |
tgtgtaggaattcgagcaggtcatgtttgaatgcagnnnnnnnn---act-gttttgtgtgtatgtgattgtattaatttcaatatgtttataactgacg |
113 |
Q |
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| T |
4006286 |
tgtgtaggaattcgagcaggtcatgtttgaatgcagtttttttttttacttgttttgtgtgtatatgattgtactaatttcaatatgtttataactgac- |
4006188 |
T |
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| Q |
114 |
ggaaaacaaatatgttgataattttttaatgtgatag |
150 |
Q |
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| T |
4006187 |
ggaaaacaaatatgttgataattttttaatgtgatag |
4006151 |
T |
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Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 183 - 237
Target Start/End: Complemental strand, 4005048 - 4004994
Alignment:
| Q |
183 |
gtggagggtgtttggtgacaatggtagagtgtccaagtgcatgtttggatctatg |
237 |
Q |
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| T |
4005048 |
gtggagggtgtttggtgacaatggtagagtgtccaagtgcatgtttggatctatg |
4004994 |
T |
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