View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2554_low_16 (Length: 253)
Name: NF2554_low_16
Description: NF2554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2554_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 20456904 - 20457138
Alignment:
| Q |
1 |
atgaaaccatcaagttttggaatacccacacaggtgcttgcttgaactcaataaacactgggtctcaggtatgttccctgttgtggaacaagaatgagag |
100 |
Q |
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| T |
20456904 |
atgaaaccatcaagttttggaatacccacacaggtgcatgcttgaactcaatcgacactgggtctcaggtatgttccctgttgtggaacaagaatgagag |
20457003 |
T |
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| Q |
101 |
ggagctactcagctctcatggttttacacagaatcagctaacactttggaaatatccttcaatggtgaagatggcagaactcaatggtcacacttcaaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
20457004 |
ggagctactcagctctcatggttttacacagaatcagctaacactttggaaatatccttcaatggtgaagatagcagaactcaatggtcacacttcaaga |
20457103 |
T |
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| Q |
201 |
gttcttcatatggcgcagagcccggatggttgcac |
235 |
Q |
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| T |
20457104 |
gttcttcatatggcgcagaacccggatggttgcac |
20457138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 5 - 232
Target Start/End: Original strand, 1632958 - 1633185
Alignment:
| Q |
5 |
aaccatcaagttttggaatacccacacaggtgcttgcttgaactcaataaacactgggtctcaggtatgttccctgttgtggaacaagaatgagagggag |
104 |
Q |
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| T |
1632958 |
aaccatcaagttttggaatacacacacaggtgcatgcctgaactcggttgacaccgggtctcaggtatgttccctactatggaacaagaatgaaagggag |
1633057 |
T |
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| Q |
105 |
ctactcagctctcatggttttacacagaatcagctaacactttggaaatatccttcaatggtgaagatggcagaactcaatggtcacacttcaagagttc |
204 |
Q |
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| T |
1633058 |
ttgctcagctctcatggttttgctcagaatcagctaacactttggaaatatccttcaatggtcaagatggcagagctcaatggtcatacttcaagagttc |
1633157 |
T |
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| Q |
205 |
ttcatatggcgcagagcccggatggttg |
232 |
Q |
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| T |
1633158 |
tttatatggcacagagtccggatggttg |
1633185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 55 - 229
Target Start/End: Complemental strand, 43526558 - 43526384
Alignment:
| Q |
55 |
acactgggtctcaggtatgttccctgttgtggaacaagaatgagagggagctactcagctctcatggttttacacagaatcagctaacactttggaaata |
154 |
Q |
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||||||| || || |||||| | ||| | |||||| |||| ||| | |||||||| ||||| |||||||| || |||| ||||| || |||||||| || |
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| T |
43526558 |
acactggatcgcaagtatgtgctctgctatggaaccagaacgagcgtgagctacttagctcacatggtttcaccgagaaccagcttaccctttggaagta |
43526459 |
T |
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| Q |
155 |
tccttcaatggtgaagatggcagaactcaatggtcacacttcaagagttcttcatatggcgcagagcccggatgg |
229 |
Q |
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| T |
43526458 |
tccttctatggtgaaaatggcagatctcaatggtcacacttcgagggtgctgtatatggcgcagagtccagatgg |
43526384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 193
Target Start/End: Original strand, 18685925 - 18686034
Alignment:
| Q |
84 |
tggaacaagaatgagagggagctactcagctctcatggttttacacagaatcagctaacactttggaaatatccttcaatggtgaagatggcagaactca |
183 |
Q |
| |
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|||| ||| |||||| | ||||| || ||||| |||||||| || ||||| ||||| || |||||||| |||||||||||| ||||||| || || || |
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| T |
18685925 |
tggagcaaaaatgagcgcgagcttcttagctcacatggtttgactcagaaccagcttaccctttggaagtatccttcaatgttgaagattgccgagcttc |
18686024 |
T |
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| Q |
184 |
atggtcacac |
193 |
Q |
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| T |
18686025 |
atggtcacac |
18686034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 198
Target Start/End: Original strand, 43218537 - 43218642
Alignment:
| Q |
93 |
aatgagagggagctactcagctctcatggttttacacagaatcagctaacactttggaaatatccttcaatggtgaagatggcagaactcaatggtcaca |
192 |
Q |
| |
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|||||| | ||||| || ||||| |||||||| | ||||| || || || |||||||| |||||||||||| |||||| ||| || || |||||||||| |
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| T |
43218537 |
aatgagtgtgagcttcttagctcacatggtttccctcagaaccaactcactctttggaagtatccttcaatgttgaagaaggccgaccttaatggtcaca |
43218636 |
T |
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| Q |
193 |
cttcaa |
198 |
Q |
| |
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| |||| |
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| T |
43218637 |
cctcaa |
43218642 |
T |
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