View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2554_low_2 (Length: 485)
Name: NF2554_low_2
Description: NF2554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2554_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 16 - 461
Target Start/End: Original strand, 55061707 - 55062143
Alignment:
| Q |
16 |
gggtttgttattattcctgttgtatcaatggttgnnnnnnnagaggggggttttttcttcatgatgcaaactgttgaatgcttctgnnnnnnnatttggc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
55061707 |
gggtttgttattattcctgttgtatcaatggttgtttttttagaggggggtttgttcttcatgatg--aactgttgaatgcttctgtttcttt-tttggc |
55061803 |
T |
|
| Q |
116 |
atctgtaaattttatgctttatattccaatatttttatgatttagggtttggagtttgtgactgatgttttagatggaaataaattttattgctcagaga |
215 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55061804 |
atctgtaaatgtt-----ttatattccaatatttttatgatttagggtttagagtttgtgactgatgttttagatggaaataaattttattgctcagaga |
55061898 |
T |
|
| Q |
216 |
aacgtttccatgtagtagattttctcaccctgatgagttttgagtattgatggaatattttaagctcagatctaattgtttatattaatttttctatatc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
55061899 |
aacgtttccatgtagtagattttctcaccctgatgagttttgagtattgatggaatattttaagctcagatctaattgtttatatttatttttctatatc |
55061998 |
T |
|
| Q |
316 |
tgnnnnnnnnnnncttcttctttttactgctttcatgattggcatggttcgatcaataaatcatagcagggctgtaattttgcgcttttatcggttttca |
415 |
Q |
| |
|
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
55061999 |
tg-tttttttcttcttcttctttttgctgctttcatgattggcatggttcgatcaataaatcatagcggggctgtaattttgcgcttttatcggttttca |
55062097 |
T |
|
| Q |
416 |
gtgcatgtgcaattttgtttgatatctatccctcatgcgttgtttg |
461 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
55062098 |
gtgcatgtgcaatttagtttgatatctatccctcatgcgttgtttg |
55062143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 358 - 461
Target Start/End: Original strand, 40932150 - 40932253
Alignment:
| Q |
358 |
catggttcgatcaataaatcatagcagggctgtaattttgcgcttttatcggttttcagtgcatgtgcaattttgtttgatatctatccctcatgcgttg |
457 |
Q |
| |
|
||||||||||||||| | ||| ||||| ||||| ||||||| |||||||| ||||| |||||||||||||||||||||| ||||| ||||||| ||| |
|
|
| T |
40932150 |
catggttcgatcaatgagtcacagcagtgctgttattttgcacttttatccattttcgatgcatgtgcaattttgtttgatttctattcctcatgtgttc |
40932249 |
T |
|
| Q |
458 |
tttg |
461 |
Q |
| |
|
|||| |
|
|
| T |
40932250 |
tttg |
40932253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 147 - 248
Target Start/End: Original strand, 40931974 - 40932077
Alignment:
| Q |
147 |
tttttatgatttagggtttggagtttgtgactg---atgttttagatggaaataaattttattgctcagagaaacgtttccatgtagtagattttctcac |
243 |
Q |
| |
|
||||||||||||||| ||| | |||||||||| |||||||||| || ||||||| || ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
40931974 |
tttttatgatttagg-tttaaaatttgtgactgttcatgttttagacggcaataaatcttgttggtcagagaaacgtttccatgtagtagattttctcac |
40932072 |
T |
|
| Q |
244 |
cctga |
248 |
Q |
| |
|
|||| |
|
|
| T |
40932073 |
actga |
40932077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 359 - 450
Target Start/End: Original strand, 40940181 - 40940270
Alignment:
| Q |
359 |
atggttcgatcaataaatcatagcagggctgtaattttgcgcttttatcggttttcagtgcatgtgcaattttgtttgatatctatccctca |
450 |
Q |
| |
|
||||||| |||||||||||||||| ||||||| |||||||||||||||| ||||| || ||||||| ||||| ||||| ||||||||||| |
|
|
| T |
40940181 |
atggttcaatcaataaatcatagcggggctgtcattttgcgcttttatcagtttttgatg-atgtgcacttttg-ttgatttctatccctca |
40940270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 40939674 - 40939710
Alignment:
| Q |
65 |
gttttttcttcatgatgcaaactgttgaatgcttctg |
101 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
40939674 |
gtttattcttcatgatgcaaattgttgaatgcttctg |
40939710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University