View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2554_low_20 (Length: 242)
Name: NF2554_low_20
Description: NF2554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2554_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 46 - 174
Target Start/End: Original strand, 55061495 - 55061623
Alignment:
| Q |
46 |
gttcattttgtttctcttctcttaatttaccaaaatgaaattcttgatgtgcatgtgtcatagatcgatcaaaggttgttttttgtattgatgggcttgt |
145 |
Q |
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| T |
55061495 |
gttcattttgtttcttttctcttaatttaccaaaatgaaattcttgatgtgcatgtgtcatagatcgaacaaaggttgttttttgtattgatgggcttgt |
55061594 |
T |
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| Q |
146 |
ttgatcttcatcatgcaaattgttaatgc |
174 |
Q |
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| T |
55061595 |
ttgatcttcatcatgcaaattgttaatgc |
55061623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 46 - 166
Target Start/End: Original strand, 40931607 - 40931728
Alignment:
| Q |
46 |
gttcattttgtttctcttctcttaatttaccaaaatgaaattcttgatgtgcatgtgtcatagatcgatcaaaggtt-gttttttgtattgatgggcttg |
144 |
Q |
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| T |
40931607 |
gttcattttgtttctcatcttttactttaccaaaatgcaatgcttgatgtggatgtgtcgtagctcgaccaaaggttaattttttttattgatgggcttg |
40931706 |
T |
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| Q |
145 |
tttgatcttcatcatgcaaatt |
166 |
Q |
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| T |
40931707 |
tttgttcttcatcatacaaatt |
40931728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 47 - 169
Target Start/End: Original strand, 40939574 - 40939699
Alignment:
| Q |
47 |
ttcattttgtttctcttctcttaatttaccaaaatgaaattcttgatgtgcatgtgtcatagatcgatcaaaggttgttt---tttgtattgatgggctt |
143 |
Q |
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| T |
40939574 |
ttcattttgtttctcatattttactttaccaaaatgaatttgttgaggtggatgtgtcatagatcgatcaaaggttgtttttatttttattgatgagctt |
40939673 |
T |
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| Q |
144 |
gtttgatcttcatcatgcaaattgtt |
169 |
Q |
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|||| ||||||| |||||||||||| |
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| T |
40939674 |
gtttattcttcatgatgcaaattgtt |
40939699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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