View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2554_low_23 (Length: 240)
Name: NF2554_low_23
Description: NF2554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2554_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 9 - 223
Target Start/End: Original strand, 34044601 - 34044815
Alignment:
| Q |
9 |
gaagaaaatggttgatctttgcaatagattgaacatccagattgagagcactgaaccaggaactcgctccactacaagtaaagttgtggcagtaccccaa |
108 |
Q |
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| T |
34044601 |
gaagaaaatggttgatctttgcaatagattgaacatccagattgagagcactgaaccaggaactcgctccactacaagtaaagttgcggcagtaccccaa |
34044700 |
T |
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| Q |
109 |
gaggaaattaaagaagctggaacatccaaagaagatgaagacgaagagtggactgggttgatcaagcgagtacaggacatgggaaaggggaaggcgcggg |
208 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
34044701 |
gaggaaattaaagaagctggaacatccaaagaaaatgaagacgaagagtggactgggttgatcaagcaagtacaggacatgagaaaggggaaggcgcggg |
34044800 |
T |
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| Q |
209 |
tgcaggtgttggtgc |
223 |
Q |
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||||||||||||||| |
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| T |
34044801 |
tgcaggtgttggtgc |
34044815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 9 - 223
Target Start/End: Complemental strand, 4044991 - 4044777
Alignment:
| Q |
9 |
gaagaaaatggttgatctttgcaatagattgaacatccagattgagagcactgaaccaggaactcgctccactacaagtaaagttgtggcagtaccccaa |
108 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||| || || |
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| T |
4044991 |
gaagaaaatggttgatctttgcaacagattgaacatccagattgagagcactgaatcaggaactcgctccacctcaagtaaagttacggcagtccctgaa |
4044892 |
T |
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| Q |
109 |
gaggaaattaaagaagctggaacatccaaagaagatgaagacgaagagtggactgggttgatcaagcgagtacaggacatgggaaaggggaaggcgcggg |
208 |
Q |
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|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||| |
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| T |
4044891 |
gaggaaatcaaagaagctggaacatccgaagaagatgaagacgaagagtggactgggttgatcaagcaagtacaggacatgggaaagaggaaggctcggg |
4044792 |
T |
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| Q |
209 |
tgcaggtgttggtgc |
223 |
Q |
| |
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||||||||||||||| |
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| T |
4044791 |
tgcaggtgttggtgc |
4044777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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