View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2554_low_26 (Length: 237)
Name: NF2554_low_26
Description: NF2554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2554_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 93 - 220
Target Start/End: Original strand, 8411432 - 8411559
Alignment:
| Q |
93 |
gtacgtttccctcattcttactaaattaaattcaactttactccgactcaagctaaattggggaagaaaagatatatatcatgaattctcctactcaatt |
192 |
Q |
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|||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8411432 |
gtacatttccctcattcttactaaaaaaatctcaactttactccgactcaagctaaattggggaagaaaagatatatatcatgaattctcctactcaatt |
8411531 |
T |
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| Q |
193 |
acattatatatgaagttaaaaattatat |
220 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
8411532 |
acattatatatgaagttaaaaattatat |
8411559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 93 - 220
Target Start/End: Original strand, 8433530 - 8433657
Alignment:
| Q |
93 |
gtacgtttccctcattcttactaaattaaattcaactttactccgactcaagctaaattggggaagaaaagatatatatcatgaattctcctactcaatt |
192 |
Q |
| |
|
|||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8433530 |
gtacatttccctcattcttactaaaaaaatctcaactttactccgactcaagctaaattggggaagaaaagatatatatcatgaattctcctactcaatt |
8433629 |
T |
|
| Q |
193 |
acattatatatgaagttaaaaattatat |
220 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
8433630 |
acattatatatgaagttaaaaattatat |
8433657 |
T |
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