View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2554_low_5 (Length: 379)
Name: NF2554_low_5
Description: NF2554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2554_low_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 18 - 379
Target Start/End: Original strand, 20456547 - 20456911
Alignment:
| Q |
18 |
tgaaaggtgggcataggcag---cgagtagggtctttggcatggaataaccacacactcacaactggagggatggatggtagaattatcaataatgatgt |
114 |
Q |
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| T |
20456547 |
tgaaaggtgggcataggcagcagcgagtagggtctttggcatggaataaccacatactcacaacaggagggatggatggtagaattatcaataatgatgt |
20456646 |
T |
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| Q |
115 |
aagaattagagcacacattgttgaaacatacagagggcatgaacgagaagtttgcggattgaaatggtcggcttctggtcaacaattagccagtggaggg |
214 |
Q |
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| T |
20456647 |
aagaattagagcacatattgttgaaacatacagagggcatgaacgagaagtttgcggattgaaatggtcggcttctggtcaacaattagccagtggaggg |
20456746 |
T |
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| Q |
215 |
aatgataatcaactttatatctgggatagaagtacatcaacttctaggtctccaacacagtggcttcacaggcttgaagatcatacatctgcagtaaaag |
314 |
Q |
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| T |
20456747 |
aatgataatcaactttatatctgggatagaagtacatcaacttctaggtctccaacacagtggcttcacaggcttgaagatcatacatctgcagtaaaag |
20456846 |
T |
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| Q |
315 |
ctcttgcttggtgtccttttcaagcgaatttgctagctactggtggaggcagtggcgatgaaacc |
379 |
Q |
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| T |
20456847 |
ctcttgcttggtgtcctttccaagcgaatttgctagctactggtggaggcagtggcgatgaaacc |
20456911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 18 - 373
Target Start/End: Original strand, 1632600 - 1632955
Alignment:
| Q |
18 |
tgaaaggtgggcataggcagcgagtagggtctttggcatggaataaccacacactcacaactggagggatggatggtagaattatcaataatgatgtaag |
117 |
Q |
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| T |
1632600 |
tgaaaggtggtcataggcagcgagtagggtctttggcatggaacaaccacatactcacaaccggagggatggacggtaaaattatcaataatgatgtaag |
1632699 |
T |
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| Q |
118 |
aattagagcacacattgttgaaacatacagagggcatgaacgagaagtttgcggattgaaatggtcggcttctggtcaacaattagccagtggagggaat |
217 |
Q |
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| T |
1632700 |
aattagagcacacattgttgaaacatacagagggcatgaacaagaagtttgtggattgaaatggtcggcttccggtcaacaattagccagtggagggaat |
1632799 |
T |
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| Q |
218 |
gataatcaactttatatctgggatagaagtacatcaacttctaggtctccaacacagtggcttcacaggcttgaagatcatacatctgcagtaaaagctc |
317 |
Q |
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| T |
1632800 |
gataatctactttacatctgggacagaggtacatcaacttctagttctcctacacagtggcttcacaggcttgaagatcatacatctgcagtaaaggctc |
1632899 |
T |
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| Q |
318 |
ttgcttggtgtccttttcaagcgaatttgctagctactggtggaggcagtggcgat |
373 |
Q |
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| T |
1632900 |
ttgcttggtgtccattccaagggaatttgctagctactggtggaggcagtggcgat |
1632955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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