View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2554_low_6 (Length: 373)

Name: NF2554_low_6
Description: NF2554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2554_low_6
NF2554_low_6
[»] chr3 (16 HSPs)
chr3 (1-366)||(39671101-39671480)
chr3 (1-65)||(39020163-39020229)
chr3 (1-40)||(44677488-44677527)
chr3 (1-64)||(10206977-10207048)
chr3 (1-40)||(24482967-24483006)
chr3 (1-40)||(32767704-32767743)
chr3 (1-40)||(33375888-33375927)
chr3 (1-40)||(49363255-49363294)
chr3 (1-40)||(50206974-50207013)
chr3 (1-39)||(46253651-46253689)
chr3 (4-60)||(36121826-36121885)
chr3 (1-63)||(37508502-37508572)
chr3 (1-41)||(6178430-6178470)
chr3 (1-41)||(18741144-18741184)
chr3 (1-41)||(25188469-25188509)
chr3 (1-41)||(42358643-42358683)
[»] scaffold0204 (1 HSPs)
scaffold0204 (1-60)||(23086-23143)
[»] chr6 (11 HSPs)
chr6 (3-60)||(14986751-14986812)
chr6 (1-40)||(11547533-11547572)
chr6 (1-40)||(13143386-13143425)
chr6 (1-38)||(2777320-2777357)
chr6 (1-64)||(2075455-2075526)
chr6 (2-40)||(30152535-30152573)
chr6 (1-63)||(2242026-2242096)
chr6 (1-38)||(5570338-5570375)
chr6 (1-63)||(17551383-17551453)
chr6 (1-33)||(4820286-4820318)
chr6 (1-33)||(34504055-34504087)
[»] chr4 (17 HSPs)
chr4 (1-60)||(48335564-48335621)
chr4 (1-41)||(41262349-41262389)
chr4 (1-40)||(439264-439303)
chr4 (1-40)||(39344984-39345023)
chr4 (1-42)||(6141782-6141823)
chr4 (1-62)||(22819647-22819716)
chr4 (5-61)||(25318073-25318128)
chr4 (1-63)||(31275151-31275212)
chr4 (6-42)||(47240843-47240879)
chr4 (1-40)||(624316-624355)
chr4 (1-40)||(5932161-5932200)
chr4 (1-40)||(9118868-9118907)
chr4 (1-36)||(26206981-26207016)
chr4 (1-40)||(30079874-30079913)
chr4 (1-63)||(54000695-54000765)
chr4 (9-64)||(35820174-35820230)
chr4 (1-33)||(41486147-41486179)
[»] chr7 (9 HSPs)
chr7 (5-62)||(46773650-46773715)
chr7 (1-40)||(32815196-32815235)
chr7 (1-40)||(37808768-37808807)
chr7 (1-63)||(21822603-21822673)
chr7 (1-63)||(39231732-39231802)
chr7 (1-36)||(40353296-40353331)
chr7 (4-63)||(26749014-26749068)
chr7 (1-38)||(7295480-7295517)
chr7 (1-41)||(34978323-34978363)
[»] chr1 (13 HSPs)
chr1 (1-67)||(38303692-38303755)
chr1 (1-40)||(44294043-44294082)
chr1 (1-38)||(20565122-20565159)
chr1 (1-38)||(29586023-29586060)
chr1 (1-60)||(47398456-47398511)
chr1 (1-40)||(1852955-1852994)
chr1 (1-40)||(3603139-3603178)
chr1 (1-40)||(8411722-8411761)
chr1 (1-40)||(9008253-9008292)
chr1 (1-40)||(33024575-33024614)
chr1 (1-40)||(36577416-36577455)
chr1 (4-38)||(26837482-26837516)
chr1 (1-41)||(50775161-50775201)
[»] chr8 (12 HSPs)
chr8 (1-40)||(33589234-33589273)
chr8 (1-40)||(34018836-34018875)
chr8 (1-64)||(41520964-41521035)
chr8 (1-40)||(1633894-1633933)
chr8 (1-40)||(11017833-11017872)
chr8 (1-40)||(11658004-11658043)
chr8 (1-40)||(16966813-16966852)
chr8 (1-40)||(45529250-45529289)
chr8 (1-39)||(7956011-7956049)
chr8 (1-63)||(36110135-36110205)
chr8 (1-41)||(24798362-24798402)
chr8 (1-33)||(33605082-33605114)
[»] chr5 (14 HSPs)
chr5 (1-40)||(8267824-8267863)
chr5 (1-63)||(8675437-8675507)
chr5 (1-62)||(5042246-5042315)
chr5 (1-62)||(23126347-23126416)
chr5 (1-40)||(5821616-5821655)
chr5 (1-40)||(21064230-21064269)
chr5 (1-40)||(35099009-35099048)
chr5 (9-59)||(2688998-2689047)
chr5 (1-39)||(16437569-16437607)
chr5 (1-38)||(22649666-22649703)
chr5 (1-38)||(43441768-43441805)
chr5 (1-33)||(15478693-15478725)
chr5 (1-33)||(18842325-18842357)
chr5 (1-41)||(42446295-42446335)
[»] chr2 (9 HSPs)
chr2 (4-59)||(13265975-13266029)
chr2 (1-40)||(13347819-13347858)
chr2 (1-40)||(35589391-35589430)
chr2 (4-63)||(29684619-29684686)
chr2 (1-60)||(17779391-17779453)
chr2 (1-40)||(18176968-18177007)
chr2 (2-36)||(433882-433916)
chr2 (1-41)||(22888826-22888866)
chr2 (1-41)||(41195610-41195650)
[»] scaffold0321 (1 HSPs)
scaffold0321 (1-40)||(19664-19703)
[»] scaffold0471 (1 HSPs)
scaffold0471 (1-63)||(4-74)


Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 39671101 - 39671480
Alignment:
Q  1 aatgtgagtatga-gagagaaaattgttgcaaaaattgtca--------atgttcaaatatcatttctctttatctaatagactttatattttggctatt 91  Q
    ||||||||||||| |||||||| ||||||||||| ||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39671101 aatgtgagtatgaagagagaaagttgttgcaaaagttgtcactaaatagatgttcaaatatcatttctctttatctaatagactttatattttggctatt 39671200  T
Q  92 aaaatgtgttaggtgcatgta---------aggggtttggagtatatgtcgtttgttggtcttggaggagaatacttttcatgtgtgaatttgagttagg 182  Q
    |||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39671201 aaaatgtgttaggtgcatgtatatttagtaaggggtttggagtatatgtcgtttgttggtcttggaggagaatacttttcatgtgtgaatttgagttagg 39671300  T
Q  183 tttaaaatgannnnnnnnnnnngtttataattgttttgagcaagcgattgtatttgatcgatagacatgacgaaatgttcttagtgaataatacattgtc 282  Q
    |||| |||||            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39671301 tttagaatgaatttttttt---gtttataattgttttgtgcaagcgattgtatttgatcgatagacatgacgaaatgttcttagtgaataatacattgtc 39671397  T
Q  283 aaaggacttataaggtgtcaagaacatatcatatatttgaatattattcatattgtgacattatttggaataacaatgcacctt 366  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  39671398 aaaggacttataaggtgtcaagaacat-tcatatatttgaatattattcatattgtgacattatttggaataaaaatgcacctt 39671480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 39020163 - 39020229
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtc--aatgttcaaatatcatttctctttat 65  Q
    ||||||||||||||||| ||| || ||| |||| |||||  ||||||||||||||||||||||||||    
T  39020163 aatgtgagtatgagagaaaaagttattgtaaaagttgtctgaatgttcaaatatcatttctctttat 39020229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 44677488 - 44677527
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtca 40  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  44677488 aatgtgagtatgagagagaaaattgttgcaaaagttgtca 44677527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 10206977 - 10207048
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtca--------atgttcaaatatcatttctcttta 64  Q
    ||||||||||||||||||||| ||||||||||| ||||||        ||||||||||||||||||||||||    
T  10206977 aatgtgagtatgagagagaaagttgttgcaaaagttgtcactaaatggatgttcaaatatcatttctcttta 10207048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 24482967 - 24483006
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtca 40  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  24482967 aatgtgagtatgagagagaaagttgttgcaaaagttgtca 24483006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 32767743 - 32767704
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtca 40  Q
    |||||||||||||||||||||||| |||||||| ||||||    
T  32767743 aatgtgagtatgagagagaaaattattgcaaaagttgtca 32767704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 33375927 - 33375888
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtca 40  Q
    |||||||||||||||||||||||||||| |||| ||||||    
T  33375927 aatgtgagtatgagagagaaaattgttgtaaaagttgtca 33375888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 49363255 - 49363294
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtca 40  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  49363255 aatgtgagtatgagagagaaagttgttgcaaaagttgtca 49363294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 50206974 - 50207013
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtca 40  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  50206974 aatgtgagtatgagagagaaagttgttgcaaaagttgtca 50207013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 46253689 - 46253651
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtc 39  Q
    ||||||||||||||||| ||||||||||||||| |||||    
T  46253689 aatgtgagtatgagagaaaaaattgttgcaaaagttgtc 46253651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 36121885 - 36121826
Alignment:
Q  4 gtgagtatgagagagaaaattgttgcaaaaattgtca---atgttcaaatatcatttctc 60  Q
    |||||||| ||| ||||| ||||||||||| ||||||   ||||||||||||||||||||    
T  36121885 gtgagtataagaaagaaagttgttgcaaaagttgtcatttatgttcaaatatcatttctc 36121826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 37508502 - 37508572
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtca--------atgttcaaatatcatttctcttt 63  Q
    ||||||||||||||||||||| ||||||||||| || |||        |||||||||||||||||||||||    
T  37508502 aatgtgagtatgagagagaaagttgttgcaaaagttatcactaaatggatgttcaaatatcatttctcttt 37508572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 6178430 - 6178470
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtcaa 41  Q
    ||||||||||||||||||||||||||  ||||| |||||||    
T  6178430 aatgtgagtatgagagagaaaattgtcacaaaagttgtcaa 6178470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 18741184 - 18741144
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtcaa 41  Q
    ||||||||||||| ||||||||||||| |||||||| ||||    
T  18741184 aatgtgagtatgaaagagaaaattgttacaaaaattatcaa 18741144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 25188469 - 25188509
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtcaa 41  Q
    |||||||||| |||||||||| ||||||||||| |||||||    
T  25188469 aatgtgagtaagagagagaaagttgttgcaaaagttgtcaa 25188509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 42358643 - 42358683
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtcaa 41  Q
    ||||||||||||||||||||| ||||  |||||||||||||    
T  42358643 aatgtgagtatgagagagaaagttgtcacaaaaattgtcaa 42358683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 23143 - 23086
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtcaatgttcaaatatcatttctc 60  Q
    ||||||| ||||||||||||||||||||||||||||||  |||||| |||||||||||||    
T  23143 aatgtgaatatgagagagaaaattgttgcaaaaattgt--atgttcgaatatcatttctc 23086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 14986751 - 14986812
Alignment:
Q  3 tgtgagtatgagagagaaaattgttgcaaaaattgtc----aatgttcaaatatcatttctc 60  Q
    ||||||||||||||||||||||||||||||| |||||    |||||||||||||||||||||    
T  14986751 tgtgagtatgagagagaaaattgttgcaaaagttgtcactaaatgttcaaatatcatttctc 14986812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 11547533 - 11547572
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtca 40  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  11547533 aatgtgagtatgagagagaaaattgttgcaaaagttgtca 11547572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 13143386 - 13143425
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtca 40  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  13143386 aatgtgagtatgagagagaaagttgttgcaaaaattgtca 13143425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 2777320 - 2777357
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgt 38  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  2777320 aatgtgagtatgagagagaaaattgttgcaaaagttgt 2777357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 2075455 - 2075526
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtca--------atgttcaaatatcatttctcttta 64  Q
    ||||||||||||||||||||| |||||||||||  |||||        ||||||||||||||||||||||||    
T  2075455 aatgtgagtatgagagagaaagttgttgcaaaagctgtcactaaatggatgttcaaatatcatttctcttta 2075526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 30152535 - 30152573
Alignment:
Q  2 atgtgagtatgagagagaaaattgttgcaaaaattgtca 40  Q
    |||||||||||||||||||| ||||||||||| ||||||    
T  30152535 atgtgagtatgagagagaaagttgttgcaaaagttgtca 30152573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 2242026 - 2242096
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtcaa--------tgttcaaatatcatttctcttt 63  Q
    ||||||||||||||||||||| ||||  |||||||||||||        ||||||||||||||||||||||    
T  2242026 aatgtgagtatgagagagaaagttgtcacaaaaattgtcaaaaaatgattgttcaaatatcatttctcttt 2242096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 5570338 - 5570375
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgt 38  Q
    ||||||||||||||||||||||||||  ||||||||||    
T  5570338 aatgtgagtatgagagagaaaattgtcacaaaaattgt 5570375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 17551383 - 17551453
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtcaa--------tgttcaaatatcatttctcttt 63  Q
    ||||||||||||||||||||| ||||| ||||| |||||||        ||||||||||||||||||||||    
T  17551383 aatgtgagtatgagagagaaagttgttacaaaagttgtcaaaaaatggttgttcaaatatcatttctcttt 17551453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 4820318 - 4820286
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaa 33  Q
    ||||||||||||||||||||| |||||||||||    
T  4820318 aatgtgagtatgagagagaaagttgttgcaaaa 4820286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 34504087 - 34504055
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaa 33  Q
    ||||||||||||||||||||| |||||||||||    
T  34504087 aatgtgagtatgagagagaaagttgttgcaaaa 34504055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 48335621 - 48335564
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtcaatgttcaaatatcatttctc 60  Q
    ||||||| ||||||||||||||||||||||||||||||  |||||| |||||||||||||    
T  48335621 aatgtgaatatgagagagaaaattgttgcaaaaattgt--atgttcgaatatcatttctc 48335564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 41262349 - 41262389
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtcaa 41  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  41262349 aatgtgagtaagagagagaaaattgttgcaaaaattgtcaa 41262389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 439264 - 439303
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtca 40  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  439264 aatgtgagtatgagagagaaaattgttgcgaaaattgtca 439303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 39344984 - 39345023
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtca 40  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  39344984 aatgtgagtatgagagagaaagttgttgcaaaaattgtca 39345023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 6141782 - 6141823
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtcaat 42  Q
    ||||||||||||||||||||| ||||||||||| ||||||||    
T  6141782 aatgtgagtatgagagagaaagttgttgcaaaagttgtcaat 6141823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 22819716 - 22819647
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtca--------atgttcaaatatcatttctctt 62  Q
    ||||||||||||||||||||| ||||||||||| ||||||        ||||||||||||||||||||||    
T  22819716 aatgtgagtatgagagagaaagttgttgcaaaagttgtcacaaaatggatgttcaaatatcatttctctt 22819647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 25318073 - 25318128
Alignment:
Q  5 tgagtatgagagagaaaattgttgcaaaaattgtcaatgttcaaatatcatttctct 61  Q
    |||||||||||||||||||||| |||||| || || || ||||||||||||||||||    
T  25318073 tgagtatgagagagaaaattgtcgcaaaagttatc-atattcaaatatcatttctct 25318128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 31275212 - 31275151
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaa-ttgtcaatgttcaaatatcatttctcttt 63  Q
    ||||||||||||||||||||| ||||  |||||| |||||| ||| ||||||||||||||||||    
T  31275212 aatgtgagtatgagagagaaagttgt--caaaaagttgtcactgtacaaatatcatttctcttt 31275151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 47240879 - 47240843
Alignment:
Q  6 gagtatgagagagaaaattgttgcaaaaattgtcaat 42  Q
    |||||||||||||||| ||||||||||||||||||||    
T  47240879 gagtatgagagagaaagttgttgcaaaaattgtcaat 47240843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 624316 - 624355
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtca 40  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  624316 aatgtgagtatgagagagaaagttgttgcaaaagttgtca 624355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 5932161 - 5932200
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtca 40  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  5932161 aatgtgagtatgagagagaaagttgttgcaaaagttgtca 5932200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 9118868 - 9118907
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtca 40  Q
    ||||||| ||||||||||||||||||||||||| ||||||    
T  9118868 aatgtgattatgagagagaaaattgttgcaaaagttgtca 9118907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 26206981 - 26207016
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaatt 36  Q
    ||||||| ||||||||||||||||||||||||||||    
T  26206981 aatgtgaatatgagagagaaaattgttgcaaaaatt 26207016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 30079913 - 30079874
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtca 40  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  30079913 aatgtgagtatgagagagaaagttgttgcaaaagttgtca 30079874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 54000765 - 54000695
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtcaa--------tgttcaaatatcatttctcttt 63  Q
    ||||||||||||||||||||| |||||  ||||||||||||        ||||||||||||||||||||||    
T  54000765 aatgtgagtatgagagagaaagttgttataaaaattgtcaaaaagtggttgttcaaatatcatttctcttt 54000695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 35820230 - 35820174
Alignment:
Q  9 tatgagagagaaaattgttgcaaaaattgtc-aatgttcaaatatcatttctcttta 64  Q
    ||||||||||||| |||||| |||| ||||  |||||||||||||||||||| ||||    
T  35820230 tatgagagagaaagttgttgtaaaagttgttgaatgttcaaatatcatttctgttta 35820174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 41486147 - 41486179
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaa 33  Q
    ||||||||||||||||||||| |||||||||||    
T  41486147 aatgtgagtatgagagagaaagttgttgcaaaa 41486179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 46773650 - 46773715
Alignment:
Q  5 tgagtatgagagagaaaattgttgcaaaaattgtca--------atgttcaaatatcatttctctt 62  Q
    ||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||    
T  46773650 tgagtatgagagagaaaattgttgcaaaaattgtcactgaatggatgttcaaatatcatttctctt 46773715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 32815235 - 32815196
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtca 40  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  32815235 aatgtgagtatgagagaaaaaattgttgcaaaaattgtca 32815196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 37808768 - 37808807
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtca 40  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  37808768 aatgtaagtatgagagagaaaattgttgcaaaaattgtca 37808807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 21822603 - 21822673
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtca--------atgttcaaatatcatttctcttt 63  Q
    |||| ||||||||||||||| |||||||||||||||||||        |||||||||||||||||||||||    
T  21822603 aatgcgagtatgagagagaacattgttgcaaaaattgtcacaaaatagatgttcaaatatcatttctcttt 21822673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 39231732 - 39231802
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtca--------atgttcaaatatcatttctcttt 63  Q
    ||||||||||||||||||||| ||||||||||| ||||||        |||||||||||||||||||||||    
T  39231732 aatgtgagtatgagagagaaagttgttgcaaaagttgtcactaactggatgttcaaatatcatttctcttt 39231802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 40353331 - 40353296
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaatt 36  Q
    ||||||||||||||||||||| ||||||||||||||    
T  40353331 aatgtgagtatgagagagaaagttgttgcaaaaatt 40353296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 26749068 - 26749014
Alignment:
Q  4 gtgagtatgagagagaaaattgttgcaaaaattgtcaatgttcaaatatcatttctcttt 63  Q
    |||||||||||||||||| ||||  ||||||||||   ||||||||||||||||||||||    
T  26749068 gtgagtatgagagagaaagttgt--caaaaattgt---tgttcaaatatcatttctcttt 26749014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 7295517 - 7295480
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgt 38  Q
    ||||||||||||||||||||| ||||| ||||||||||    
T  7295517 aatgtgagtatgagagagaaagttgttccaaaaattgt 7295480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 34978363 - 34978323
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtcaa 41  Q
    ||||||||||||||||||||| ||||  |||||||||||||    
T  34978363 aatgtgagtatgagagagaaagttgtcacaaaaattgtcaa 34978323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 38303692 - 38303755
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtcaatgttcaaatatcatttctctttatct 67  Q
    |||| |||||||||||||||| |||||| |||| |||   |||||||||||||||||||||||||||    
T  38303692 aatgcgagtatgagagagaaagttgttgtaaaagttg---atgttcaaatatcatttctctttatct 38303755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 44294082 - 44294043
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtca 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  44294082 aatgtgagtatgagagagaaaattattgcaaaaattgtca 44294043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 20565122 - 20565159
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgt 38  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  20565122 aatgtgagtatgagagagaaagttgttgcaaaaattgt 20565159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 29586060 - 29586023
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgt 38  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  29586060 aatgtgagtatgagagagaaaattgttgcaaaagttgt 29586023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 47398456 - 47398511
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtcaatgttcaaatatcatttctc 60  Q
    ||||||||||||||||||||||||||  |||||| ||  |||||||||||||||||||||    
T  47398456 aatgtgagtatgagagagaaaattgt--caaaaaatg--aatgttcaaatatcatttctc 47398511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 1852955 - 1852994
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtca 40  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  1852955 aatgtgagtatgagagagaaagttgttgcaaaagttgtca 1852994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 3603178 - 3603139
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtca 40  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  3603178 aatgtgagtatgagagagaaagttgttgcaaaagttgtca 3603139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 8411722 - 8411761
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtca 40  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  8411722 aatgtgagtatgagagagaaagttgttgcaaaagttgtca 8411761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 9008292 - 9008253
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtca 40  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  9008292 aatgtgagtatgagagagaaagttgttgcaaaagttgtca 9008253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 33024575 - 33024614
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtca 40  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  33024575 aatgtgagtatgagagagaaagttgttgcaaaagttgtca 33024614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 36577416 - 36577455
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtca 40  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  36577416 aatgtgagtatgagagagaaagttgttgcaaaagttgtca 36577455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 38
Target Start/End: Complemental strand, 26837516 - 26837482
Alignment:
Q  4 gtgagtatgagagagaaaattgttgcaaaaattgt 38  Q
    |||||||||||||||||||||||||||||| ||||    
T  26837516 gtgagtatgagagagaaaattgttgcaaaagttgt 26837482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 50775161 - 50775201
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtcaa 41  Q
    ||||||||||||||||||||| ||||  |||||||||||||    
T  50775161 aatgtgagtatgagagagaaagttgtcacaaaaattgtcaa 50775201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 33589234 - 33589273
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtca 40  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  33589234 aatgtgagtatgagagagaaaattgttgcaaaagttgtca 33589273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 34018875 - 34018836
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtca 40  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  34018875 aatgtgagtatgagagagaaaattgttgcaaaagttgtca 34018836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 41521035 - 41520964
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtca--------atgttcaaatatcatttctcttta 64  Q
    ||||||||||||||||||||||||||||||||| || |||        ||||||||||||||||||||||||    
T  41521035 aatgtgagtatgagagagaaaattgttgcaaaagttatcactaaatggatgttcaaatatcatttctcttta 41520964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 1633894 - 1633933
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtca 40  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  1633894 aatgtgagtatgagagagaaagttgttgcaaaagttgtca 1633933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 11017872 - 11017833
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtca 40  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  11017872 aatgtgagtatgagagagaaagttgttgcaaaagttgtca 11017833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 11658004 - 11658043
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtca 40  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  11658004 aatgtgagtatgagagagaaagttgttgcaaaagttgtca 11658043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 16966852 - 16966813
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtca 40  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  16966852 aatgtgagtatgagagagaaagttgttgcaaaagttgtca 16966813  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 45529250 - 45529289
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtca 40  Q
    ||||||||||||||||||||| ||||| ||||||||||||    
T  45529250 aatgtgagtatgagagagaaagttgttacaaaaattgtca 45529289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 7956011 - 7956049
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtc 39  Q
    ||||||||||||||||||||| ||||||||||| |||||    
T  7956011 aatgtgagtatgagagagaaagttgttgcaaaagttgtc 7956049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 36110205 - 36110135
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtca--------atgttcaaatatcatttctcttt 63  Q
    ||||||||||||| ||||||||||||||||||| || |||        |||||||||||||||||||||||    
T  36110205 aatgtgagtatgaaagagaaaattgttgcaaaagttttcactaaatggatgttcaaatatcatttctcttt 36110135  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 24798362 - 24798402
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtcaa 41  Q
    ||||||||||||||||||||| |||||  ||||||||||||    
T  24798362 aatgtgagtatgagagagaaagttgttaaaaaaattgtcaa 24798402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 33605082 - 33605114
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaa 33  Q
    ||||||||||||||||||||||||||| |||||    
T  33605082 aatgtgagtatgagagagaaaattgttccaaaa 33605114  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 8267824 - 8267863
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtca 40  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  8267824 aatgtgagtatgagagagaaagttgttgcaaaaattgtca 8267863  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 8675437 - 8675507
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtca--------atgttcaaatatcatttctcttt 63  Q
    ||||||||||||||||||||||||||||||||| || |||        |||||||||||||||||||||||    
T  8675437 aatgtgagtatgagagagaaaattgttgcaaaagttatcacaaaatggatgttcaaatatcatttctcttt 8675507  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 5042315 - 5042246
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtca--------atgttcaaatatcatttctctt 62  Q
    ||||||||||||||||| ||| ||||||||||||||||||        ||||||||||||||||||||||    
T  5042315 aatgtgagtatgagagataaagttgttgcaaaaattgtcactaaatggatgttcaaatatcatttctctt 5042246  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 23126347 - 23126416
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtca--------atgttcaaatatcatttctctt 62  Q
    |||||||||||| |||||||||||||||||||| ||||||        ||||||||||||||||||||||    
T  23126347 aatgtgagtatgggagagaaaattgttgcaaaagttgtcactaaatggatgttcaaatatcatttctctt 23126416  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 5821616 - 5821655
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtca 40  Q
    ||||| ||||||||||| ||||||||||||||||||||||    
T  5821616 aatgtaagtatgagagaaaaaattgttgcaaaaattgtca 5821655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 21064230 - 21064269
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtca 40  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  21064230 aatgtgagtatgagagagaaagttgttgcaaaagttgtca 21064269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 35099009 - 35099048
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtca 40  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  35099009 aatgtgagtatgagagagaaagttgttgcaaaagttgtca 35099048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 2688998 - 2689047
Alignment:
Q  9 tatgagagagaaaattgttgcaaaaattgtcaatgttcaaatatcatttct 59  Q
    ||||| ||||||| ||||||||||| ||||| |||||||||||||||||||    
T  2688998 tatgaaagagaaagttgttgcaaaagttgtc-atgttcaaatatcatttct 2689047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 16437569 - 16437607
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtc 39  Q
    ||||||||||||||||||||| ||||||||||| |||||    
T  16437569 aatgtgagtatgagagagaaagttgttgcaaaagttgtc 16437607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 22649666 - 22649703
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgt 38  Q
    ||||||||||||||||||||||||||  ||||||||||    
T  22649666 aatgtgagtatgagagagaaaattgtcacaaaaattgt 22649703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 43441805 - 43441768
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgt 38  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  43441805 aatgtgagtatgagagagaaagttgttgcaaaagttgt 43441768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 15478725 - 15478693
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaa 33  Q
    |||||||||||||||||||||||| ||||||||    
T  15478725 aatgtgagtatgagagagaaaattattgcaaaa 15478693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 18842325 - 18842357
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaa 33  Q
    ||||||||||||||||||||| |||||||||||    
T  18842325 aatgtgagtatgagagagaaagttgttgcaaaa 18842357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 42446295 - 42446335
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtcaa 41  Q
    |||||||||| |||||||||| ||||||||||| |||||||    
T  42446295 aatgtgagtaagagagagaaagttgttgcaaaagttgtcaa 42446335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 13266029 - 13265975
Alignment:
Q  4 gtgagtatgagagagaaaattgttgcaaaaattgtcaatgttcaaatatcatttct 59  Q
    |||||||||||||||||||||||||||||||||||   ||| ||||||||||||||    
T  13266029 gtgagtatgagagagaaaattgttgcaaaaattgt-gttgtacaaatatcatttct 13265975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 13347819 - 13347858
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtca 40  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  13347819 aatgtgagtatgagagagaaagttgttgcaaaaattgtca 13347858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 35589391 - 35589430
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtca 40  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  35589391 aatgtgagtatgagagagaaaattgttgcaaaagttgtca 35589430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 29684619 - 29684686
Alignment:
Q  4 gtgagtatgagagagaaaattgttgcaaaaattgtc--------aatgttcaaatatcatttctcttt 63  Q
    |||||||||||||||||| |||||||||||||||||        ||||||||||||||||||||||||    
T  29684619 gtgagtatgagagagaaagttgttgcaaaaattgtcactaaataaatgttcaaatatcatttctcttt 29684686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 17779453 - 17779391
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtc---aatgttcaaatatcatttctc 60  Q
    ||||| ||||||||||| ||| |||||||||||||||||   ||||||||||||| |||||||    
T  17779453 aatgtaagtatgagagaaaaagttgttgcaaaaattgtcactaatgttcaaatattatttctc 17779391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 18177007 - 18176968
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtca 40  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  18177007 aatgtgagtatgagagagaaagttgttgcaaaagttgtca 18176968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 433916 - 433882
Alignment:
Q  2 atgtgagtatgagagagaaaattgttgcaaaaatt 36  Q
    |||||||||||||||||||| ||||||||||||||    
T  433916 atgtgagtatgagagagaaagttgttgcaaaaatt 433882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 22888826 - 22888866
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtcaa 41  Q
    ||||||||||||||||||||| ||||  |||||||||||||    
T  22888826 aatgtgagtatgagagagaaagttgtcacaaaaattgtcaa 22888866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 41195650 - 41195610
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtcaa 41  Q
    ||||||||||||||||||||||||||  ||||| |||||||    
T  41195650 aatgtgagtatgagagagaaaattgtcacaaaagttgtcaa 41195610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 19703 - 19664
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtca 40  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  19703 aatgtgagtatgagagagaaagttgttgcaaaagttgtca 19664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 74 - 4
Alignment:
Q  1 aatgtgagtatgagagagaaaattgttgcaaaaattgtca--------atgttcaaatatcatttctcttt 63  Q
    ||||||||||||| ||||||||||||||||||| || |||        |||||||||||||||||||||||    
T  74 aatgtgagtatgaaagagaaaattgttgcaaaagttttcactaaatggatgttcaaatatcatttctcttt 4  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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