View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2555_high_12 (Length: 263)
Name: NF2555_high_12
Description: NF2555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2555_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 20 - 261
Target Start/End: Original strand, 32465395 - 32465646
Alignment:
| Q |
20 |
actacttccaagtcgcatttaatcatgcaacatgcttcc-------cattaatgatttatgcatttttgagatgaagagggagagagtgagagagtataa |
112 |
Q |
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| T |
32465395 |
actacttccaagtcgcatttaatcatgcaacatgcttcccaattcccattaatgatttatgcatttttgagatgaagagggagagaatgagagagtataa |
32465494 |
T |
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| Q |
113 |
tgtggtatgctgctggttaagatggtctaaaatggctcatcaaatttgatttatttctatattatttcaaagctaatacgtagg---nnnnnnnnncttg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32465495 |
tgtggtatgctgctggttaagatggtctaaaatggctcatcaaatttgatttatttctatattatttcaaagctaatacgtaggtttttttttcttcttg |
32465594 |
T |
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| Q |
210 |
tatgtatcttcattattcaagcatttatatttaataccaactatagtctgtg |
261 |
Q |
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||||||||||||| |||||||||||||||||| |||||||||||||| |||| |
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| T |
32465595 |
tatgtatcttcatgattcaagcatttatattttataccaactatagtttgtg |
32465646 |
T |
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