View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2555_high_15 (Length: 248)
Name: NF2555_high_15
Description: NF2555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2555_high_15 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 16 - 232
Target Start/End: Original strand, 6973730 - 6973946
Alignment:
| Q |
16 |
cttctttcttttttgataaacaaagtggtagacaagaattggttcaatatctcaacatgattgttcatagtaagtcttgtaactccttcccatgtgtgtg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
6973730 |
cttctttcttttttgataaacaaagtggtagacaagaattggtttaatatctcaacatgattgttcatagtaagtcttgtaactccttcccatgtgtatg |
6973829 |
T |
|
| Q |
116 |
ttcttctatttttagcaaatttatcttgggcatcaaacaagtatcttacaagtgtaacctttgtttctttaatatatcttacatataacctatgaaaacg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
6973830 |
ttcttctatttttagcaaatttatcttgggcatcaaacaagtatcttacaagtgtaacctttatttctttaatatatcttacatgtaacctatgaaaacg |
6973929 |
T |
|
| Q |
216 |
aatttggtatatgatgg |
232 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
6973930 |
aatttggtatatgatgg |
6973946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University