View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2555_high_19 (Length: 240)
Name: NF2555_high_19
Description: NF2555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2555_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 159; Significance: 8e-85; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 8872075 - 8872245
Alignment:
| Q |
1 |
atgagccataattgattgtcttcttctactccaactattggaagattccacttcttctgcaacagcttcacaccataaaccctttgatgactcaacttct |
100 |
Q |
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| T |
8872075 |
atgagccataattgattgtcttcttctactccaactattggaagattccacttcttctacaacagcttcacaccataaaccctttgatgactcaacttct |
8872174 |
T |
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| Q |
101 |
aaaagtgtatatccattgtgtcttttaaacggatgtgaaataaaattcacaacattgtccaggaacattat |
171 |
Q |
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| T |
8872175 |
aaaagtgtatatccattatgtcttttgaacggatgtgaaataaaattcacaacattgtccaggaacattat |
8872245 |
T |
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Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 178 - 240
Target Start/End: Original strand, 8872288 - 8872350
Alignment:
| Q |
178 |
caatttctctcaagtccaggaacatacctcacatcttgcaaatcatactcatgcttatccgtt |
240 |
Q |
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| T |
8872288 |
caatttctctcaagtccaggaacatacctcacatcttgcaaatcatactcatgcttatccgtt |
8872350 |
T |
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