View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2555_high_20 (Length: 236)
Name: NF2555_high_20
Description: NF2555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2555_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 34610846 - 34611064
Alignment:
| Q |
1 |
ataacgccgtaaacatagtggacgcaacagcctcatcaggccacaacaaactatgtaatgctcacaatacccacaatcgtcatggctgcaaccacaattt |
100 |
Q |
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| T |
34610846 |
ataacgccgtaaacttagaggacgcaacagcctcatcaggccacaacaaactatgtaatgctcacaatacccacaatcgtcatggctgcaaccacaattt |
34610945 |
T |
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| Q |
101 |
aaaactaaaactatgatccaaatacttgttctcttgtggaacataagattcacaacaatatgatactttggtcatcacaattcacaacagaaaacataag |
200 |
Q |
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| T |
34610946 |
aaaactaaaactatgatccaaatacttgttctcttgtggaacataagattcacaacaatatgatactttggtcttcacaattcacaacagaaaacataag |
34611045 |
T |
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| Q |
201 |
tgtataagttatagtagaaac |
221 |
Q |
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| T |
34611046 |
cg--taagttatagtagaaac |
34611064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 11 - 180
Target Start/End: Original strand, 34605956 - 34606125
Alignment:
| Q |
11 |
aaacatagtggacgcaacagcctcatcaggccacaacaaactatgtaatgctcacaatacccacaatcgtcatggctgcaaccacaatttaaaactaaaa |
110 |
Q |
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|||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
34605956 |
aaacatagtggacgcaacggactcatcagaccacaacaaactatgtaatgctcacaatacccacgatcgtcatggctgctaccacaatttaaaactaaaa |
34606055 |
T |
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| Q |
111 |
ctatgatccaaatacttgttctcttgtggaacataagattcacaacaatatgatactttggtcatcacaa |
180 |
Q |
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| T |
34606056 |
ccatgatccaaatacttgttctcttgtggaacataagattcacaacaatatgatactttggtcatcacaa |
34606125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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