View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2555_high_5 (Length: 408)
Name: NF2555_high_5
Description: NF2555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2555_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 19 - 396
Target Start/End: Original strand, 39558729 - 39559107
Alignment:
| Q |
19 |
agatgacatatacactctttcttaaattactaagcatcaaatgatcgcaagcannnnnnnacgttaacatttaaaactatagatgataaatactttttga |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
39558729 |
agatgacatatacactctttcttaaattactaagcatcaaatgatcgcaaacatttttttacgttaacatttaaaactatagatgataaatactttttga |
39558828 |
T |
|
| Q |
119 |
taattcaaatttaatactaacggattcatgattgcatggaatctctttggagtaaatgttggacaaattattaacaaccttatgttacagatgaaatatt |
218 |
Q |
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|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39558829 |
taattcaaatttaataataacagattcatgattgcatggaatctctttggagtaaatgttggacaaattattaacaaccttatgttacagatgaaatatt |
39558928 |
T |
|
| Q |
219 |
aaatattttgttaaccttatacaacaaattccca-catcctcacctctatctattatgccccactatatatgtataataaaaatagaagatccatgcaaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39558929 |
aaatattttgttaaccttatacaacaaattcccaccatcctcacctctatctattatgccccactatatatgtataataaaaatagaagatccatgcaaa |
39559028 |
T |
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| Q |
318 |
gggtgattgagatgtagcattttgttttctaccatgatgacatgtacactttgattgattagatcatgtgtctggccta |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39559029 |
gggtgattgagatgtagcattttgttttctaccatgatgacatgtacactttgattgattagatcatgtgtctggccta |
39559107 |
T |
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