View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2555_high_9 (Length: 308)

Name: NF2555_high_9
Description: NF2555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2555_high_9
NF2555_high_9
[»] chr8 (12 HSPs)
chr8 (194-300)||(6437940-6438047)
chr8 (18-76)||(6437773-6437831)
chr8 (181-263)||(42412361-42412443)
chr8 (183-263)||(26677122-26677203)
chr8 (181-263)||(28802814-28802896)
chr8 (181-263)||(5392096-5392178)
chr8 (183-259)||(15559112-15559188)
chr8 (185-249)||(31132781-31132845)
chr8 (181-263)||(44790400-44790482)
chr8 (183-252)||(3384583-3384652)
chr8 (181-250)||(42558572-42558641)
chr8 (183-263)||(29730874-29730954)
[»] chr1 (17 HSPs)
chr1 (193-263)||(40019818-40019888)
chr1 (181-263)||(28839386-28839468)
chr1 (181-252)||(45889238-45889309)
chr1 (181-251)||(27831893-27831963)
chr1 (185-263)||(8327768-8327846)
chr1 (181-263)||(27391394-27391476)
chr1 (181-255)||(30749978-30750052)
chr1 (181-255)||(30771429-30771503)
chr1 (181-263)||(32348265-32348347)
chr1 (181-263)||(49494142-49494224)
chr1 (181-263)||(51749162-51749244)
chr1 (181-263)||(5442387-5442469)
chr1 (183-257)||(17724699-17724773)
chr1 (182-263)||(36467174-36467255)
chr1 (183-252)||(47479954-47480023)
chr1 (182-263)||(50267417-50267498)
chr1 (183-259)||(34813966-34814042)
[»] chr5 (11 HSPs)
chr5 (181-252)||(8369686-8369757)
chr5 (181-263)||(42575617-42575699)
chr5 (184-263)||(41594826-41594904)
chr5 (181-263)||(17242933-17243015)
chr5 (181-263)||(35334505-35334587)
chr5 (181-263)||(35646068-35646150)
chr5 (185-252)||(858386-858453)
chr5 (183-251)||(7311171-7311239)
chr5 (183-259)||(10650068-10650144)
chr5 (182-262)||(25814412-25814492)
chr5 (211-263)||(39008209-39008261)
[»] chr3 (8 HSPs)
chr3 (182-263)||(26134681-26134762)
chr3 (181-257)||(5245459-5245535)
chr3 (182-252)||(1772095-1772165)
chr3 (182-263)||(54122202-54122283)
chr3 (185-263)||(11251105-11251183)
chr3 (182-263)||(9017849-9017930)
chr3 (183-252)||(14756103-14756172)
chr3 (182-252)||(46785968-46786040)
[»] scaffold0321 (1 HSPs)
scaffold0321 (181-263)||(9530-9612)
[»] chr7 (7 HSPs)
chr7 (181-263)||(2846654-2846736)
chr7 (181-263)||(11616609-11616691)
chr7 (185-263)||(33584614-33584692)
chr7 (181-263)||(7425855-7425938)
chr7 (181-251)||(29257594-29257664)
chr7 (181-263)||(33774022-33774103)
chr7 (211-263)||(30463093-30463145)
[»] chr4 (13 HSPs)
chr4 (182-263)||(21240941-21241023)
chr4 (181-263)||(26185229-26185311)
chr4 (181-263)||(49306634-49306716)
chr4 (185-261)||(40020928-40021004)
chr4 (183-263)||(49448890-49448970)
chr4 (181-263)||(42024179-42024261)
chr4 (181-263)||(22872364-22872448)
chr4 (181-263)||(4360386-4360468)
chr4 (181-251)||(33047539-33047609)
chr4 (181-251)||(41710134-41710204)
chr4 (181-263)||(54729462-54729544)
chr4 (222-263)||(283455-283496)
chr4 (186-263)||(8295081-8295158)
[»] scaffold0006 (1 HSPs)
scaffold0006 (181-263)||(229870-229951)
[»] chr6 (2 HSPs)
chr6 (181-263)||(31265826-31265908)
chr6 (214-257)||(33109453-33109496)
[»] chr2 (11 HSPs)
chr2 (181-263)||(28108353-28108435)
chr2 (183-263)||(8550620-8550700)
chr2 (183-263)||(43950426-43950506)
chr2 (181-263)||(44534461-44534543)
chr2 (182-263)||(24775786-24775867)
chr2 (183-252)||(39159668-39159737)
chr2 (183-252)||(39209457-39209526)
chr2 (222-263)||(45464193-45464234)
chr2 (183-251)||(2756723-2756791)
chr2 (183-263)||(18181191-18181271)
chr2 (211-263)||(43077704-43077756)


Alignment Details
Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 194 - 300
Target Start/End: Original strand, 6437940 - 6438047
Alignment:
Q  194 atgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttataga-nnnnnnnaatatacgtaaaatgaacaa 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |        ||||||||||||||||||||    
T  6437940 atgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctgtctcattcacttatacattttttttaatatacgtaaaatgaacaa 6438039  T
Q  293 ataactca 300  Q
    ||||||||    
T  6438040 ataactca 6438047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 6437773 - 6437831
Alignment:
Q  18 aacttagtaccaaaaaccgaacgtgacagatttggtactctcaaataagtatgagatcg 76  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6437773 aacttagtaccaaaaaccgaacgtgacagatttggtactctcaaataagtatgagatcg 6437831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 181 - 263
Target Start/End: Complemental strand, 42412443 - 42412361
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||||||| ||||||||||| ||||  |||||||| | ||||||||| ||||||| ||||||||||||||||||||||||    
T  42412443 ccactttgcatttatgataatggagaatgcaccaatatatgacaagagcacttaaaactatttttctctctcattcacttata 42412361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 183 - 263
Target Start/End: Original strand, 26677122 - 26677203
Alignment:
Q  183 actttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaac-aatttttctctctcattcacttata 263  Q
    ||||||||| ||||||||||||||||  |||||||||||||||   || ||||||| |||||||||||||| ||||||||||    
T  26677122 actttgcatttatgataatggtgaatgcaccaatattttacaatgacacttaaaacaaatttttctctctctttcacttata 26677203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 181 - 263
Target Start/End: Original strand, 28802814 - 28802896
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||||||| ||||||| ||| ||||| | ||||| || ||||||||| ||||||| ||||||||||||| |||| |||||    
T  28802814 ccactttgcatttatgatagtggagaatagatcaatacttaacaagagcacttaaaaccatttttctctctctttcatttata 28802896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 263
Target Start/End: Original strand, 5392096 - 5392178
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||||||| ||||||| ||| ||||  ||||||| || |||| |||| ||||||| ||||||||||||| |||| |||||    
T  5392096 ccactttgcatttatgatagtggagaatgcaccaatacttgacaaaagcacttaaaaccatttttctctctccttcatttata 5392178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 259
Target Start/End: Complemental strand, 15559188 - 15559112
Alignment:
Q  183 actttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcact 259  Q
    ||||||||| |||||||||||| |||| ||||||| || |||||| || ||||||  |||||| |||||| ||||||    
T  15559188 actttgcatttatgataatggtaaatacaccaatacttgacaagaacacttaaaatcatttttgtctctccttcact 15559112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 249
Target Start/End: Original strand, 31132781 - 31132845
Alignment:
Q  185 tttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctct 249  Q
    ||||||| ||||||| ||| ||||||||||||| || ||||||||| ||||||  ||||||||||    
T  31132781 tttgcatttatgatactggagaatataccaatacttaacaagagcacttaaaatcatttttctct 31132845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 263
Target Start/End: Complemental strand, 44790482 - 44790400
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||| ||| ||||||| ||| ||||  ||||||| || ||||| ||| ||||||| ||||||||||||| |||| |||||    
T  44790482 ccactttacatttatgatagtggagaatgcaccaatacttaacaagtgcacttaaaactatttttctctctccttcatttata 44790400  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 252
Target Start/End: Original strand, 3384583 - 3384652
Alignment:
Q  183 actttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctc 252  Q
    ||||||||| ||||||| ||  |||||||||||||  | ||||||| |||||| || |||||||||||||    
T  3384583 actttgcatttatgatagtgaagaatataccaatacataacaagagtatttaataccatttttctctctc 3384652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 250
Target Start/End: Complemental strand, 42558641 - 42558572
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctc 250  Q
    ||||||||||| ||||||| ||| ||||| ||||||| || |||||| || ||||||| |||| ||||||    
T  42558641 ccactttgcatttatgatagtggagaataaaccaatacttaacaagaacaattaaaaccatttatctctc 42558572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 263
Target Start/End: Complemental strand, 29730954 - 29730874
Alignment:
Q  183 actttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||||| ||||||| ||| ||||  ||||||| || |||||| || ||||||| | ||||||||||| |||| |||||    
T  29730954 actttgcatttatgatagtggagaatgcaccaatacttaacaagaacacttaaaaccacttttctctctccttcatttata 29730874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 193 - 263
Target Start/End: Original strand, 40019818 - 40019888
Alignment:
Q  193 tatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||||||||||||| || |||| || ||||||||| ||||||||||||||||||||||||||||||||    
T  40019818 tatgataatggtgaatacacaaatacttgacaagagcacttaaaacaatttttctctctcattcacttata 40019888  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 181 - 263
Target Start/End: Original strand, 28839386 - 28839468
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||||||| ||||||| ||| ||||| ||||||| || ||||||||||||||||| ||||||||||||| |||| |||||    
T  28839386 ccactttgcatttatgatagtggagaatagaccaatacttaacaagagcatttaaaactatttttctctctccttcatttata 28839468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 181 - 252
Target Start/End: Complemental strand, 45889309 - 45889238
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctc 252  Q
    ||||||||||| ||||||||||| ||||| ||||||| || ||||||||| ||||||| |||||||||||||    
T  45889309 ccactttgcatttatgataatggagaatagaccaatagttaacaagagcacttaaaaccatttttctctctc 45889238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 27831893 - 27831963
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctct 251  Q
    ||||||||||| ||||||||||||||||  ||||||| || ||||| ||| ||||||| ||||||||||||    
T  27831893 ccactttgcatttatgataatggtgaatgcaccaatacttgacaagggcacttaaaactatttttctctct 27831963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 263
Target Start/End: Original strand, 8327768 - 8327846
Alignment:
Q  185 tttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||| |||||||  || ||||| ||||||| || ||||||||| ||||||  |||||||||||||||||| |||||    
T  8327768 tttgcatttatgataggggagaatagaccaatacttaacaagagcacttaaaattatttttctctctcattcatttata 8327846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 263
Target Start/End: Original strand, 27391394 - 27391476
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||||||| ||||||||| || |||  ||||||| || | ||||||| ||||||  ||||||||||||| ||||||||||    
T  27391394 ccactttgcatttatgataatagtaaatgaaccaatacttaataagagcacttaaaatcatttttctctctccttcacttata 27391476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 255
Target Start/End: Original strand, 30749978 - 30750052
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcatt 255  Q
    ||||||||||| ||||||| | | ||||| | |||||||| |||| |||| ||||||| ||||||||||||||||    
T  30749978 ccactttgcatttatgatagtagagaatacatcaatatttaacaaaagcacttaaaactatttttctctctcatt 30750052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 255
Target Start/End: Original strand, 30771429 - 30771503
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcatt 255  Q
    ||||||||||| ||||||| | | ||||| | |||||||| |||| |||| ||||||| ||||||||||||||||    
T  30771429 ccactttgcatttatgatagtagagaatacatcaatatttaacaaaagcacttaaaactatttttctctctcatt 30771503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 263
Target Start/End: Original strand, 32348265 - 32348347
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||||||| | ||||| |||  |||| ||||||| || ||||||||| ||||||| ||||||||||||| |||| |||||    
T  32348265 ccactttgcatttgtgatagtggaaaatagaccaatacttaacaagagcacttaaaaccatttttctctctccttcatttata 32348347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 263
Target Start/End: Complemental strand, 49494224 - 49494142
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||| ||| ||||||| ||| ||||  |||||||||| ||||| ||| ||||||| ||||||||||||| |||| |||||    
T  49494224 ccactttacatttatgatagtggagaattgaccaatatttaacaagtgcacttaaaactatttttctctctctttcatttata 49494142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 263
Target Start/End: Complemental strand, 51749244 - 51749162
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||||||| ||||||||||| ||||| ||||||| || |||||| || ||||||  | ||||||||||| |||| |||||    
T  51749244 ccactttgcatttatgataatggagaataaaccaatacttaacaagaacacttaaaatcagttttctctctccttcatttata 51749162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 263
Target Start/End: Original strand, 5442387 - 5442469
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||||||| ||||||| ||| ||||  || |||| || ||||||  | ||||||| |||||||||||||||||| |||||    
T  5442387 ccactttgcatttatgatagtggagaatgcactaatacttaacaagataacttaaaaccatttttctctctcattcatttata 5442469  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 257
Target Start/End: Complemental strand, 17724773 - 17724699
Alignment:
Q  183 actttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattca 257  Q
    ||||||||| |||| || ||| ||||  | ||||| || ||||||||| ||||||||||||||||||||| ||||    
T  17724773 actttgcatttatggtagtggagaatgcatcaataattaacaagagcacttaaaacaatttttctctctccttca 17724699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 263
Target Start/End: Complemental strand, 36467255 - 36467174
Alignment:
Q  182 cactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    |||||| ||| ||| ||| ||| ||||  ||||||| || ||||| ||| ||||||| |||||||||||||||||| |||||    
T  36467255 cactttacatttatcatagtggagaatccaccaatacttaacaagtgcacttaaaactatttttctctctcattcatttata 36467174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 252
Target Start/End: Complemental strand, 47480023 - 47479954
Alignment:
Q  183 actttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctc 252  Q
    ||||||||| |||||||||||| |||| |  |||| || |||| || ||||||||| |||||||||||||    
T  47480023 actttgcatttatgataatggtaaatacattaatacttgacaaaagtatttaaaaccatttttctctctc 47479954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 263
Target Start/End: Complemental strand, 50267498 - 50267417
Alignment:
Q  182 cactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    |||||| ||| ||||||||||| ||||  ||||||| || ||||| ||| ||||||| ||||||||||| | |||| |||||    
T  50267498 cactttacatttatgataatggagaatgcaccaatacttaacaagtgcacttaaaactatttttctctcactttcatttata 50267417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 259
Target Start/End: Original strand, 34813966 - 34814042
Alignment:
Q  183 actttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcact 259  Q
    ||||||||| |||||||||| | |||  || |||| || |||||| || ||||||| ||||||||||||| ||||||    
T  34813966 actttgcatttatgataatgataaatgcactaatacttaacaagaacacttaaaactatttttctctctccttcact 34814042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 181 - 252
Target Start/End: Complemental strand, 8369757 - 8369686
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctc 252  Q
    ||||||||||| ||||||| ||| ||||  ||||||| || |||||||||||||||||||||||||||||||    
T  8369757 ccactttgcatttatgatagtggagaatgcaccaatacttaacaagagcatttaaaacaatttttctctctc 8369686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 263
Target Start/End: Complemental strand, 42575699 - 42575617
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||||||| ||||||| ||| ||||| ||||||| ||  |||||||| ||||||| |||||||||||||||||| |||||    
T  42575699 ccactttgcatttatgatagtggagaatacaccaatacttaccaagagcacttaaaaccatttttctctctcattcatttata 42575617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 263
Target Start/End: Complemental strand, 41594904 - 41594826
Alignment:
Q  184 ctttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    |||||||| ||||||||||||||||  ||||||| || |||| | |||||||||  ||||||||||||||||||||||||    
T  41594904 ctttgcatttatgataatggtgaatg-accaatacttgacaaaaacatttaaaattatttttctctctcattcacttata 41594826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 263
Target Start/End: Complemental strand, 17243015 - 17242933
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||||||| ||||||| | | ||||| ||||||| || ||||||| | | ||||| |||||||||||||||||| |||||    
T  17243015 ccactttgcatttatgatagtagagaatagaccaatacttaacaagagtactaaaaaccatttttctctctcattcatttata 17242933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 263
Target Start/End: Complemental strand, 35334587 - 35334505
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||||||| ||||||| ||| ||||| || |||| || | ||||||| ||||||| ||||||||||||| |||| |||||    
T  35334587 ccactttgcatttatgatagtggagaatagacaaatacttaataagagcacttaaaactatttttctctctccttcatttata 35334505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 263
Target Start/End: Complemental strand, 35646150 - 35646068
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||||||| ||||||| ||| ||||  ||||||| || |||||| || ||||||  |||||||||||||||||| |||||    
T  35646150 ccactttgcatttatgatagtggagaatgcaccaatacttaacaagatcacttaaaatcatttttctctctcattcatttata 35646068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 185 - 252
Target Start/End: Original strand, 858386 - 858453
Alignment:
Q  185 tttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctc 252  Q
    ||||||| ||||||||||| |||| ||||||||||| ||||||  | ||||||| |||||| ||||||    
T  858386 tttgcatttatgataatggagaatgtaccaatatttaacaagataacttaaaaccatttttttctctc 858453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 7311239 - 7311171
Alignment:
Q  183 actttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctct 251  Q
    ||||||||| |||||||||||| |||  || |||| || | ||||||| ||||||| ||||||||||||    
T  7311239 actttgcatttatgataatggtaaatgcacaaatacttgataagagcacttaaaaccatttttctctct 7311171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 259
Target Start/End: Original strand, 10650068 - 10650144
Alignment:
Q  183 actttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcact 259  Q
    ||||||||| |||| ||||||| ||| |||||||||||  |||||||| ||||| | |||| | ||| |||||||||    
T  10650068 actttgcatttatgttaatggtaaatgtaccaatatttgtcaagagcacttaaagccatttatttctttcattcact 10650144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 262
Target Start/End: Original strand, 25814412 - 25814492
Alignment:
Q  182 cactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttat 262  Q
    |||||| ||| ||||||| |||  ||| |||||||| || ||||| ||| ||||||| ||||||||||||| |||| ||||    
T  25814412 cactttacatttatgatagtggataatgtaccaatacttaacaagtgcacttaaaactatttttctctctccttcatttat 25814492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 263
Target Start/End: Original strand, 39008209 - 39008261
Alignment:
Q  211 accaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||| || ||||||||| ||||||| ||||||||||||| |||| |||||    
T  39008209 accaatacttaacaagagcacttaaaaccatttttctctctccttcatttata 39008261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 182 - 263
Target Start/End: Complemental strand, 26134762 - 26134681
Alignment:
Q  182 cactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    |||||||||| ||||||| ||| ||||| || |||| || ||||||||| ||||||||||||||||||||| |||| |||||    
T  26134762 cactttgcatttatgatagtggagaatagactaatacttaacaagagcacttaaaacaatttttctctctccttcatttata 26134681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 181 - 257
Target Start/End: Original strand, 5245459 - 5245535
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattca 257  Q
    |||||||| || ||||||| ||| ||||| ||||||| || ||||||||| ||||||| ||||||||||||| ||||    
T  5245459 ccactttgtatttatgatattggagaatacaccaatacttaacaagagcacttaaaactatttttctctctccttca 5245535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 252
Target Start/End: Complemental strand, 1772165 - 1772095
Alignment:
Q  182 cactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctc 252  Q
    |||||||| | ||||||| ||| ||||||||||||| || |||||| || ||||||| |||||||||||||    
T  1772165 cactttgcttttatgatagtggagaatataccaatacttaacaagaacacttaaaaccatttttctctctc 1772095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 263
Target Start/End: Complemental strand, 54122283 - 54122202
Alignment:
Q  182 cactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    |||||||||| ||||||| ||| ||||  ||||||| || |||| | |||||||||| ||||||||||||| |||| |||||    
T  54122283 cactttgcatttatgatagtggagaatgcaccaatacttaacaaaaacatttaaaactatttttctctctccttcatttata 54122202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 263
Target Start/End: Complemental strand, 11251183 - 11251105
Alignment:
Q  185 tttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||| ||||||| ||| ||||  ||||||| || ||||||||| ||||||  |||||| ||||||||||| |||||    
T  11251183 tttgcatttatgatagtggagaatgcaccaatacttaacaagagcacttaaaatcatttttttctctcattcatttata 11251105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 263
Target Start/End: Original strand, 9017849 - 9017930
Alignment:
Q  182 cactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    |||||||||| ||| ||| ||| ||||  ||||||| || |||| |||| ||||||| ||||||||||||| |||| |||||    
T  9017849 cactttgcatttataatagtggagaatgcaccaatacttaacaaaagcacttaaaactatttttctctctctttcatttata 9017930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 252
Target Start/End: Complemental strand, 14756172 - 14756103
Alignment:
Q  183 actttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctc 252  Q
    ||||||||| ||||||| ||| |||| ||||| || || ||||||||| ||||||  |||||||||||||    
T  14756172 actttgcatttatgatagtggagaatgtaccagtacttaacaagagcacttaaaattatttttctctctc 14756103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 252
Target Start/End: Complemental strand, 46786040 - 46785968
Alignment:
Q  182 cactttgcatgtatgataatggtgaatataccaat--attttacaagagcatttaaaacaatttttctctctc 252  Q
    |||||||||| ||||||| ||| ||||||||||||  | || |||||| |||||||||| |||||| ||||||    
T  46786040 cactttgcatttatgatagtggagaatataccaatacacttaacaagatcatttaaaactatttttttctctc 46785968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 181 - 263
Target Start/End: Complemental strand, 9612 - 9530
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||||||| ||||||||||| ||||| |  |||| || ||||||||| ||||||| ||||||||||||| |||| |||||    
T  9612 ccactttgcatttatgataatggagaatacattaatacttaacaagagcacttaaaaccatttttctctctccttcatttata 9530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 181 - 263
Target Start/End: Complemental strand, 2846736 - 2846654
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    |||||||| || ||||||| ||| ||||| ||||||| || ||||||||| ||||||| ||||||||||||| |||| |||||    
T  2846736 ccactttgaatttatgatagtggagaatagaccaatacttaacaagagcacttaaaactatttttctctctcgttcatttata 2846654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 181 - 263
Target Start/End: Original strand, 11616609 - 11616691
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||||||| ||||||| ||| ||||  ||||||| || ||||||||| ||||||| ||||||||||||| |||| |||||    
T  11616609 ccactttgcatatatgatagtggagaatgcaccaatacttaacaagagcacttaaaaccatttttctctctccttcatttata 11616691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 263
Target Start/End: Original strand, 33584614 - 33584692
Alignment:
Q  185 tttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||| ||||||| ||| ||||| ||||||| || |||| |||| ||||||| ||||||||||||| |||| |||||    
T  33584614 tttgcatttatgatactggagaatacaccaatacttaacaatagcacttaaaaccatttttctctctccttcatttata 33584692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 263
Target Start/End: Complemental strand, 7425938 - 7425855
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatatttta-caagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||||||| ||||||| ||| ||||  ||||||| || | ||||| || ||||||| |||||||||||||||||| |||||    
T  7425938 ccactttgcatttatgatagtggagaatgcaccaatacttaaacaagaacacttaaaaccatttttctctctcattcatttata 7425855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 29257594 - 29257664
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctct 251  Q
    ||||||||||| ||||||| |||  |||| ||||||| || ||||||||| ||||||| |||||| |||||    
T  29257594 ccactttgcatttatgatagtggaaaatagaccaataattaacaagagcacttaaaaccatttttttctct 29257664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 263
Target Start/End: Complemental strand, 33774103 - 33774022
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||||||| ||||||| ||| ||||| | ||||| || |||||| || | ||||| ||||||||||||| ||||||||||    
T  33774103 ccactttgcatctatgatagtggagaatacatcaatacttaacaaga-cactcaaaactatttttctctctctttcacttata 33774022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 263
Target Start/End: Original strand, 30463093 - 30463145
Alignment:
Q  211 accaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||| || ||||| ||| ||||||| |||||||||||||||||| |||||    
T  30463093 accaatacttaacaagtgcacttaaaactatttttctctctcattcatttata 30463145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 182 - 263
Target Start/End: Original strand, 21240941 - 21241023
Alignment:
Q  182 cactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaac-aatttttctctctcattcacttata 263  Q
    |||||||||| ||||||||||||||||  ||||||| || ||||||||| ||||||| | |||||||||||| ||||| ||||    
T  21240941 cactttgcatttatgataatggtgaattgaccaatacttgacaagagcacttaaaactattttttctctctccttcacctata 21241023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 181 - 263
Target Start/End: Original strand, 26185229 - 26185311
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    |||| |||||| ||||||| ||| ||||| ||||||| || ||||||| ||||||||| ||||||||||||| |||| |||||    
T  26185229 ccacgttgcatttatgatagtggagaatagaccaatacttaacaagagtatttaaaaccatttttctctctccttcatttata 26185311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 181 - 263
Target Start/End: Original strand, 49306634 - 49306716
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||||||| |||||||  || ||||| ||||||| || ||||||||| ||||||| ||||||||||||| |||| |||||    
T  49306634 ccactttgcatttatgataggggagaatagaccaatacttaacaagagcacttaaaaccatttttctctctctttcatttata 49306716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 185 - 261
Target Start/End: Complemental strand, 40021004 - 40020928
Alignment:
Q  185 tttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcactta 261  Q
    ||||||| |||||||||||| |||  ||||||| || |||| | |||| ||||| ||||||||||||||||||||||    
T  40021004 tttgcatctatgataatggtaaatgcaccaatacttgacaaaaacattcaaaaccatttttctctctcattcactta 40020928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 183 - 263
Target Start/End: Original strand, 49448890 - 49448970
Alignment:
Q  183 actttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||||| ||||||||| | ||||  || |||| || ||||||||| ||||||| ||||||||||||| ||||||||||    
T  49448890 actttgcatttatgataatagagaatgcacaaatacttgacaagagcacttaaaaccatttttctctctccttcacttata 49448970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 263
Target Start/End: Complemental strand, 42024261 - 42024179
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||||||| ||| ||| ||| ||||| ||||||| || ||||||| | ||||||| ||||||||||||| |||| |||||    
T  42024261 ccactttgcatttataatagtggagaatagaccaatacttaacaagagtagttaaaaccatttttctctctccttcatttata 42024179  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 263
Target Start/End: Complemental strand, 22872448 - 22872364
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaa--gagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||||||| ||||||||||| ||||  ||||||| || ||||  ||||| ||||||| ||||||||||||  ||||||||||    
T  22872448 ccactttgcatttatgataatggagaatgcaccaatacttgacaaacgagcacttaaaaccatttttctctcttcttcacttata 22872364  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 263
Target Start/End: Complemental strand, 4360468 - 4360386
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||||||| |||| || ||| ||||  ||||||| || |||| |||| ||||||| |||||||||| ||||||| |||||    
T  4360468 ccactttgcatttatgctagtggagaatgcaccaatacttaacaaaagcacttaaaaccatttttctctttcattcatttata 4360386  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 33047539 - 33047609
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctct 251  Q
    |||||||| || ||||||| ||| |||| |||||||| || |||| |||| ||||||| ||||||||||||    
T  33047539 ccactttgtatttatgatagtggagaatctaccaatacttaacaaaagcacttaaaaccatttttctctct 33047609  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 41710204 - 41710134
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctct 251  Q
    ||||||||||| ||||||| |||  |||| ||||||| || ||||||||| ||||||| |||||| |||||    
T  41710204 ccactttgcatttatgatagtggaaaatagaccaataattaacaagagcacttaaaaccatttttttctct 41710134  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 263
Target Start/End: Complemental strand, 54729544 - 54729462
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||||||| ||||||| ||| ||||| || |||| || |||| | || ||||||| ||||||||||||| |||| |||||    
T  54729544 ccactttgcatttatgatagtggagaatacactaatacttaacaaaaacacttaaaactatttttctctctctttcatttata 54729462  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 263
Target Start/End: Complemental strand, 283496 - 283455
Alignment:
Q  222 acaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||||| ||||||||||||||||||||| |||| |||||    
T  283496 acaagagcacttaaaacaatttttctctctccttcatttata 283455  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 263
Target Start/End: Original strand, 8295081 - 8295158
Alignment:
Q  186 ttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    |||||| ||||||| ||| ||||  ||||||| ||  |||||| | ||||||||||||||||||||| |||| |||||    
T  8295081 ttgcatttatgatagtggagaatgcaccaatacttatcaagaggacttaaaacaatttttctctctctttcatttata 8295158  T

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Target: scaffold0006 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 263
Target Start/End: Original strand, 229870 - 229951
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||||||| ||||||||||| ||||  ||||||| || ||||||||| ||||||| |||||||| |||| |||| |||||    
T  229870 ccactttgcatttatgataatggagaatgcaccaatacttaacaagagcacttaaaac-atttttctatctccttcatttata 229951  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 263
Target Start/End: Original strand, 31265826 - 31265908
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||| ||| ||||||| ||| ||||  ||||||| || ||||||||| ||||||| ||||||||||||| |||| |||||    
T  31265826 ccactttacatttatgatagtggagaatgcaccaatacttaacaagagcacttaaaactatttttctctctccttcatttata 31265908  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 257
Target Start/End: Original strand, 33109453 - 33109496
Alignment:
Q  214 aatattttacaagagcatttaaaacaatttttctctctcattca 257  Q
    ||||||| ||||| ||||||||||| ||||||||||||||||||    
T  33109453 aatatttaacaagtgcatttaaaactatttttctctctcattca 33109496  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 263
Target Start/End: Complemental strand, 28108435 - 28108353
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||| ||||||||||| ||| ||||  ||||||| || ||||| ||| ||||||| ||||||||||||| |||| |||||    
T  28108435 ccactttacatgtatgatagtggagaatgcaccaatacttaacaagtgcacttaaaactatttttctctctccttcatttata 28108353  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 263
Target Start/End: Complemental strand, 8550700 - 8550620
Alignment:
Q  183 actttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||||| ||||||||||| ||||  || |||| || |||||| || ||||||| | ||||||||||| ||||||||||    
T  8550700 actttgcatttatgataatggagaatgcacaaatacttgacaagaacacttaaaaccacttttctctctctttcacttata 8550620  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 263
Target Start/End: Complemental strand, 43950506 - 43950426
Alignment:
Q  183 actttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||||| |||| ||||||  |||| | ||||| || |||| | |||||||||| ||||||||||||| ||||||||||    
T  43950506 actttgcatttatgttaatggaaaatacatcaatacttaacaaaaacatttaaaactatttttctctctctttcacttata 43950426  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 263
Target Start/End: Complemental strand, 44534543 - 44534461
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||||||| ||||||| ||| |||| |||||||| || |||||| |||||||||  |||||| ||| || |||| |||||    
T  44534543 ccactttgcatttatgatagtggagaatgtaccaatacttaacaagaacatttaaaatcatttttttctgtccttcatttata 44534461  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 263
Target Start/End: Complemental strand, 24775867 - 24775786
Alignment:
Q  182 cactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    |||||| ||| ||||||| ||| ||||| ||||||| || ||||| ||| ||||||  ||||||||||||| |||| |||||    
T  24775867 cactttacatttatgatagtggagaatacaccaatacttaacaagtgcacttaaaattatttttctctctccttcatttata 24775786  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 252
Target Start/End: Original strand, 39159668 - 39159737
Alignment:
Q  183 actttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctc 252  Q
    ||||||||| || ||||||||| ||| ||| || |||| ||||||||| ||||||  |||||||||||||    
T  39159668 actttgcatttaagataatggtaaatgtactaacatttgacaagagcacttaaaatcatttttctctctc 39159737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 252
Target Start/End: Complemental strand, 39209526 - 39209457
Alignment:
Q  183 actttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctc 252  Q
    ||||||||| || ||||||||| ||| ||| || |||| ||||||||| ||||||  |||||||||||||    
T  39209526 actttgcatttaagataatggtaaatgtactaacatttgacaagagcacttaaaatcatttttctctctc 39209457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 263
Target Start/End: Complemental strand, 45464234 - 45464193
Alignment:
Q  222 acaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||||||||||||  |||||| |||||||||||||||||    
T  45464234 acaagagcatttaaaatcatttttttctctcattcacttata 45464193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 2756723 - 2756791
Alignment:
Q  183 actttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctct 251  Q
    ||||| ||| |||||||||||| |||  || |||| || ||||||||| |||||| |||||||||||||    
T  2756723 actttacatttatgataatggtaaatgcactaatacttgacaagagcacttaaaataatttttctctct 2756791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 263
Target Start/End: Complemental strand, 18181271 - 18181191
Alignment:
Q  183 actttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||||| ||||||| ||| ||||  |||||||  | |||| |||| ||||||| |||||||||||||  |||||||||    
T  18181271 actttgcatttatgatagtggagaatgcaccaatacataacaaaagcacttaaaaccatttttctctctctctcacttata 18181191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 263
Target Start/End: Complemental strand, 43077756 - 43077704
Alignment:
Q  211 accaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||| || |||||  |||||||||| |||||||||||||||||| |||||    
T  43077756 accaatagttaacaagtacatttaaaactatttttctctctcattcatttata 43077704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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