View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2555_low_1 (Length: 724)

Name: NF2555_low_1
Description: NF2555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2555_low_1
NF2555_low_1
[»] chr3 (20 HSPs)
chr3 (559-707)||(53183428-53183575)
chr3 (20-185)||(24150597-24150762)
chr3 (20-185)||(46251968-46252133)
chr3 (20-184)||(27593306-27593470)
chr3 (20-163)||(26005770-26005913)
chr3 (37-185)||(26005620-26005768)
chr3 (23-185)||(38629565-38629727)
chr3 (20-185)||(39338065-39338227)
chr3 (20-185)||(35731086-35731251)
chr3 (20-176)||(30588993-30589149)
chr3 (20-185)||(36054772-36054937)
chr3 (20-185)||(50900212-50900377)
chr3 (20-162)||(52023987-52024129)
chr3 (20-185)||(13662702-13662867)
chr3 (20-167)||(38682580-38682729)
chr3 (20-183)||(36786125-36786287)
chr3 (16-185)||(26293332-26293501)
chr3 (20-185)||(26555968-26556116)
chr3 (20-185)||(19551923-19552078)
chr3 (21-75)||(6783976-6784030)
[»] chr4 (18 HSPs)
chr4 (21-185)||(33449944-33450108)
chr4 (23-185)||(26336225-26336387)
chr4 (559-707)||(33449413-33449569)
chr4 (20-184)||(42218212-42218376)
chr4 (23-185)||(45332823-45332985)
chr4 (23-185)||(45340513-45340675)
chr4 (20-185)||(8880598-8880763)
chr4 (23-176)||(42720876-42721029)
chr4 (20-184)||(8583771-8583935)
chr4 (22-185)||(52109562-52109725)
chr4 (20-185)||(44930029-44930194)
chr4 (20-185)||(47685298-47685463)
chr4 (20-162)||(54509868-54510007)
chr4 (20-183)||(3435724-3435887)
chr4 (16-180)||(25935937-25936100)
chr4 (23-96)||(40143933-40144006)
chr4 (105-185)||(40143998-40144079)
chr4 (112-185)||(7820292-7820365)
[»] chr1 (12 HSPs)
chr1 (20-185)||(1928169-1928334)
chr1 (20-185)||(36402401-36402566)
chr1 (20-178)||(26882598-26882756)
chr1 (23-185)||(29208912-29209074)
chr1 (20-185)||(52705547-52705712)
chr1 (20-176)||(45318614-45318770)
chr1 (20-162)||(33243098-33243240)
chr1 (20-162)||(33263271-33263413)
chr1 (20-183)||(10896954-10897117)
chr1 (82-162)||(9831782-9831862)
chr1 (20-77)||(9831444-9831501)
chr1 (83-166)||(45535001-45535084)
[»] chr8 (22 HSPs)
chr8 (20-185)||(40265046-40265211)
chr8 (21-186)||(8502787-8502952)
chr8 (20-185)||(10802536-10802701)
chr8 (20-185)||(7148194-7148359)
chr8 (24-185)||(37567137-37567298)
chr8 (20-183)||(4655201-4655364)
chr8 (20-185)||(2112945-2113110)
chr8 (20-185)||(29260041-29260206)
chr8 (20-185)||(30382439-30382604)
chr8 (20-185)||(41386635-41386800)
chr8 (22-166)||(4302592-4302736)
chr8 (561-707)||(8503343-8503496)
chr8 (23-185)||(42275129-42275292)
chr8 (20-162)||(9457697-9457839)
chr8 (24-188)||(35142200-35142364)
chr8 (20-185)||(28619998-28620163)
chr8 (20-185)||(43605129-43605294)
chr8 (20-185)||(41965565-41965728)
chr8 (20-155)||(9209190-9209325)
chr8 (561-625)||(35142729-35142793)
chr8 (99-186)||(40013263-40013346)
chr8 (24-61)||(1605902-1605939)
[»] chr6 (7 HSPs)
chr6 (16-185)||(30878002-30878171)
chr6 (20-185)||(6476478-6476643)
chr6 (20-185)||(10643777-10643944)
chr6 (20-162)||(29834073-29834215)
chr6 (20-162)||(29865507-29865649)
chr6 (22-126)||(7858198-7858302)
chr6 (20-185)||(3110050-3110215)
[»] chr5 (8 HSPs)
chr5 (21-186)||(17518584-17518749)
chr5 (20-156)||(6828586-6828722)
chr5 (561-707)||(17519114-17519267)
chr5 (16-185)||(40410740-40410909)
chr5 (21-186)||(10571266-10571431)
chr5 (561-693)||(10571831-10571970)
chr5 (22-130)||(2276025-2276133)
chr5 (16-130)||(6902491-6902605)
[»] chr2 (13 HSPs)
chr2 (20-185)||(20157522-20157687)
chr2 (20-182)||(34028700-34028862)
chr2 (20-185)||(24193251-24193416)
chr2 (20-185)||(29941099-29941264)
chr2 (20-185)||(11534989-11535154)
chr2 (20-185)||(6289266-6289431)
chr2 (21-188)||(24193704-24193878)
chr2 (23-185)||(11998183-11998344)
chr2 (20-185)||(45547085-45547250)
chr2 (559-692)||(24194258-24194384)
chr2 (68-146)||(45485553-45485631)
chr2 (21-128)||(2085700-2085807)
chr2 (21-159)||(38822724-38822862)
[»] chr7 (10 HSPs)
chr7 (20-185)||(152012-152177)
chr7 (20-185)||(43057446-43057611)
chr7 (20-164)||(40097248-40097392)
chr7 (20-185)||(35089871-35090036)
chr7 (20-185)||(30110957-30111122)
chr7 (20-185)||(27418407-27418572)
chr7 (20-115)||(39301080-39301175)
chr7 (20-121)||(47914886-47914987)
chr7 (126-185)||(47914094-47914153)
chr7 (16-127)||(31494389-31494500)
[»] scaffold0153 (1 HSPs)
scaffold0153 (20-183)||(34581-34744)
[»] scaffold0016 (1 HSPs)
scaffold0016 (20-183)||(81549-81712)
[»] scaffold0237 (1 HSPs)
scaffold0237 (20-162)||(21201-21343)
[»] scaffold0202 (2 HSPs)
scaffold0202 (20-82)||(16410-16472)
scaffold0202 (101-162)||(16348-16409)


Alignment Details
Target: chr3 (Bit Score: 117; Significance: 3e-59; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 559 - 707
Target Start/End: Complemental strand, 53183575 - 53183428
Alignment:
Q  559 gtcatcatacttttgacaattaagaaacaacaattgttttagtaaaataactagttcgttctttatagtgatcaaatgaacaagaaaacaatcgagacaa 658  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||| ||||||||||||||||||| ||    
T  53183575 gtcatcatacttttgacaattaagaaacaacaattgttttaggaaaataactaattcgttctttatagtgatc-aataaacaagaaaacaatcgagagaa 53183477  T
Q  659 gagtaaagacagagatagttatgtagcttggaccattgatgaaactatt 707  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  53183476 gagtaaagatagagatagttatgtagcttgtaccattgatgaaactatt 53183428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 20 - 185
Target Start/End: Complemental strand, 24150762 - 24150597
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    ||||||||||||| ||||||||||||||||||||||||||| | ||  |||||||| |||| |||||||||| ||||  | |||||||||||||||||||    
T  24150762 agtggtattcaattgagattttgcataacttaaaaattgtccactggtattcaaaactctacggattttaatggattgttgtgagtaatggattttgtga 24150663  T
Q  120 gactttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctccc 185  Q
    || | |||||| ||||||||| ||||||||||||||| |||||||||  |||||||||| ||||||    
T  24150662 gattgtttagtgtaaaatgtacctactaacaatctcacacctagccttgagacttttctatctccc 24150597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 20 - 185
Target Start/End: Complemental strand, 46252133 - 46251968
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    ||||||||||||| ||||||||||||||||||||||||||||  ||  |||||||| | || |||||||||| ||||  | |||||||||||||||||||    
T  46252133 agtggtattcaattgagattttgcataacttaaaaattgtctgctggtattcaaaactttacggattttaatggattgttgtgagtaatggattttgtga 46252034  T
Q  120 gactttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctccc 185  Q
    || | |||||| ||||||||| ||||||||||||||| |||||||||  |||||||||||||||||    
T  46252033 gattgtttagtgtaaaatgtacctactaacaatctcacacctagccttgagacttttctgtctccc 46251968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 20 - 184
Target Start/End: Original strand, 27593306 - 27593470
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    ||||||||||||| ||| ||||||| | ||||||||||||||||||  |||||||||| || |||||||||| ||||  | |||||||||||||||||||    
T  27593306 agtggtattcaattgaggttttgcacatcttaaaaattgtctattggtattcaaaattgtaaggattttaatggattgttgtgagtaatggattttgtga 27593405  T
Q  120 gactttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctcc 184  Q
    ||||||||||| ||||||||| ||||||||||||||| ||||| |||  |||||||| |||||||    
T  27593406 gactttttagtgtaaaatgtacctactaacaatctcacacctaaccttgagacttttttgtctcc 27593470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 20 - 163
Target Start/End: Complemental strand, 26005913 - 26005770
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||  |||||||| ||||||||||||||| ||||  | |||||||||||||||||||    
T  26005913 agtggtattcaattgagattttgcataacttaaaaattgtctactggtattcaaaactctatggattttaatggattgttgtgagtaatggattttgtga 26005814  T
Q  120 gactttttagtataaaatgtatctactaacaatctcatacctag 163  Q
    || | |||||| ||||||||| ||||||||||||||| ||||||    
T  26005813 gattgtttagtgtaaaatgtacctactaacaatctcacacctag 26005770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 37 - 185
Target Start/End: Complemental strand, 26005768 - 26005620
Alignment:
Q  37 attttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtgagactttttagtataaaa 136  Q
    |||||||||||||||||||||||||||||  |||||||| |||| |||||||||| ||||  | ||||||||||||||||||||| | |||||| |||||    
T  26005768 attttgcataacttaaaaattgtctattggtattcaaaactctacggattttaatggattgttgtgagtaatggattttgtgagattgtttagtgtaaaa 26005669  T
Q  137 tgtatctactaacaatctcatacctagcctcaagacttttctgtctccc 185  Q
    |||| ||||||||||||||| |||||||||  |||||||||| ||||||    
T  26005668 tgtacctactaacaatctcacacctagccttgagacttttctatctccc 26005620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 23 - 185
Target Start/End: Complemental strand, 38629727 - 38629565
Alignment:
Q  23 ggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtgagac 122  Q
    |||||||||| ||||||||||||||||||||||||||||| ||  |||||||| | || |||||||||| ||||  | |||||||||||||||||||||     
T  38629727 ggtattcaattgagattttgcataacttaaaaattgtctactggtattcaaaactatacggattttaatggattgttgtgagtaatggattttgtgagat 38629628  T
Q  123 tttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctccc 185  Q
    | |||||| ||||||||| ||||||||||||||| |||||||||  ||| |||||| ||||||    
T  38629627 tgtttagtgtaaaatgtacctactaacaatctcacacctagccttgagatttttctatctccc 38629565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 20 - 185
Target Start/End: Complemental strand, 39338227 - 39338065
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||  |||||||||| || |||||||||| ||||  | ||||||||||||||  |||    
T  39338227 agtggtattcaattgagattttgcacaacttaaaaattgtctattggtattcaaaattgtaaggattttaatggattgttgtgagtaatggattt--tga 39338130  T
Q  120 gactttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctccc 185  Q
    ||||||||||| ||||||||| ||||||||||||||| ||||| |||  |||||||| ||||||||    
T  39338129 gactttttagtgtaaaatgtacctactaacaatctcacacctaaccttgagactttt-tgtctccc 39338065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 20 - 185
Target Start/End: Original strand, 35731086 - 35731251
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||  |||||||| |||| |||||||||| ||||  | |||||||||||||||||||    
T  35731086 agtggtattcaattgagattttgcataacttaaaaattgtctactggtattcaaaactctacggattttaatggattgttgtgagtaatggattttgtga 35731185  T
Q  120 gactttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctccc 185  Q
    || | |||||| ||||||| | || |||||||||||| ||||||| |  |||||||||| ||||||    
T  35731186 gattgtttagtgtaaaatgcacctgctaacaatctcacacctagcattgagacttttctatctccc 35731251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 20 - 176
Target Start/End: Original strand, 30588993 - 30589149
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    ||||||||||||| ||||||| ||||||||||||||||||||| ||  |||||||| |||| |||||||||| ||||  | |||||||||||||||||||    
T  30588993 agtggtattcaattgagatttagcataacttaaaaattgtctactggtattcaaaactctacggattttaatggattgttgtgagtaatggattttgtga 30589092  T
Q  120 gactttttagtataaaatgtatctactaacaatctcatacctagcctcaagactttt 176  Q
    || | |||||| ||||||||| ||||||||||||||| ||||| |||  ||||||||    
T  30589093 gattgtttagtgtaaaatgtacctactaacaatctcacacctaaccttgagactttt 30589149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 20 - 185
Target Start/End: Complemental strand, 36054937 - 36054772
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    ||||||||||||| ||||||||||||||||||||||||||||  |    ||||||| |||| |||||||||| ||||  | |||||||||||||||||||    
T  36054937 agtggtattcaattgagattttgcataacttaaaaattgtctgctagttttcaaaactctacggattttaatggattgttgtgagtaatggattttgtga 36054838  T
Q  120 gactttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctccc 185  Q
    || | |||||| ||||||||||||| ||||||||||| ||||| |||  |||||||| ||||||||    
T  36054837 gattgtttagtgtaaaatgtatctattaacaatctcacacctaaccttgagacttttttgtctccc 36054772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 20 - 185
Target Start/End: Complemental strand, 50900377 - 50900212
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    |||||||||| || ||||||||||||||||||||||||||||| ||  |||||||| ||||  ||||||||| ||||  | |||||||||||||||||||    
T  50900377 agtggtattcgattgagattttgcataacttaaaaattgtctactggtattcaaaactctagagattttaatggattgttgtgagtaatggattttgtga 50900278  T
Q  120 gactttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctccc 185  Q
    || | |||| | |||||||||  |||||||||||||| |||||||||  |||||||||| ||||||    
T  50900277 gattgtttaatgtaaaatgtacatactaacaatctcacacctagccttgagacttttctatctccc 50900212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 20 - 162
Target Start/End: Complemental strand, 52024129 - 52023987
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    ||||||||||||| ||||||||||| || ||||||||||||||||   | ||||||||||| |||||||||| ||||  | |||||||||||||||  ||    
T  52024129 agtggtattcaattgagattttgcacaatttaaaaattgtctattagtaatcaaaattctacggattttaatggattgttgtgagtaatggattttaaga 52024030  T
Q  120 gactttttagtataaaatgtatctactaacaatctcataccta 162  Q
    ||||||||||||||||||||| ||| ||||||||||| |||||    
T  52024029 gactttttagtataaaatgtacctagtaacaatctcacaccta 52023987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 20 - 185
Target Start/End: Original strand, 13662702 - 13662867
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    ||||||||||||| ||||||| ||| ||||||||||||||||| |   ||||||||  ||| || ||||||| ||||  | |||||||||||||||||||    
T  13662702 agtggtattcaattgagatttcgcacaacttaaaaattgtctactcgtattcaaaacactacgggttttaatggattgttgtgagtaatggattttgtga 13662801  T
Q  120 gactttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctccc 185  Q
    || | |||||| ||||||||| ||||||||||||||| |||||||||  ||||||||||| |||||    
T  13662802 gattgtttagtgtaaaatgtacctactaacaatctcacacctagccttgagacttttctgcctccc 13662867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 20 - 167
Target Start/End: Original strand, 38682580 - 38682729
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    |||| |||||||| ||||||||||| |||||||||||||| |||||  ||||||||||||| |||||||||| ||||  | |||||||||||||||| ||    
T  38682580 agtgatattcaattgagattttgcacaacttaaaaattgt-tattggtattcaaaattctacggattttaatggattgttgtgagtaatggattttgaga 38682678  T
Q  120 gactttttagtataaaat---gtatctactaacaatctcatacctagcctc 167  Q
    || |||||||||||||||   ||| ||||||||||||||| ||||||||||    
T  38682679 gattttttagtataaaatgtagtacctactaacaatctcacacctagcctc 38682729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 20 - 183
Target Start/End: Original strand, 36786125 - 36786287
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    ||||||||||||| ||||||||||| ||||| ||| ||||||||||  |||||||||| || ||||||||||  |||  | ||||||||||||||| |||    
T  36786125 agtggtattcaattgagattttgcaaaactttaaacttgtctattggtattcaaaattgtaaggattttaatgaattgttgtgagtaatggattttatga 36786224  T
Q  120 gactttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctc 183  Q
    ||||||||||| ||||||||| |||||||||||| || |||| ||||  |||||||| ||||||    
T  36786225 gactttttagtgtaaaatgtacctactaacaatcacacacct-gccttgagacttttttgtctc 36786287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 16 - 185
Target Start/End: Complemental strand, 26293501 - 26293332
Alignment:
Q  16 atctagtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggatttt 115  Q
    |||||||| |||| ||| |||||||||||||||||||||||||| || |   |||||||| |||| |||||||||| ||||  | |||||||||||||||    
T  26293501 atctagtgatatttaattgagattttgcataacttaaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatggatttt 26293402  T
Q  116 gtgagactttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctccc 185  Q
    ||| || | |||||| ||||||||| |||||||||| |||| |||||  ||  |||||||||||||||||    
T  26293401 gtgtgattgtttagtgtaaaatgtacctactaacaacctcacacctaatcttgagacttttctgtctccc 26293332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 20 - 185
Target Start/End: Original strand, 26555968 - 26556116
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    ||||||||||||| |||||||||||||||||||||||||||||  |  |||||||| |||| ||||||||||                 |||||||||||    
T  26555968 agtggtattcaattgagattttgcataacttaaaaattgtctacgggtattcaaaactctacggattttaat-----------------ggattttgtga 26556050  T
Q  120 gactttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctccc 185  Q
    || | |||||| ||||||||| ||||||||||||||| |||||||||  |||||||||| ||||||    
T  26556051 gattgtttagtgtaaaatgtacctactaacaatctcacacctagccttgagacttttctatctccc 26556116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 185
Target Start/End: Complemental strand, 19552078 - 19551923
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    ||||||||| |||  |||||||||||||||||||||||||||| ||  |||||||| ||||  ||||||||| ||||           | ||||||||||    
T  19552078 agtggtatttaattaagattttgcataacttaaaaattgtctagtggtattcaaaactctacagattttaattgatt----------gttgattttgtga 19551989  T
Q  120 gactttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctccc 185  Q
     | | |||||| ||||||||| ||| ||||||||||| |||||||||  |||||||||| ||||||    
T  19551988 aattgtttagtgtaaaatgtacctaataacaatctcacacctagccttgagacttttctttctccc 19551923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 6784030 - 6783976
Alignment:
Q  21 gtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaa 75  Q
    ||||||||| ||| ||||||| || |||||||||||||||| |||| ||||||||    
T  6784030 gtggtattccatcaagattttccacaacttaaaaattgtctcttgatattcaaaa 6783976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 113; Significance: 8e-57; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 21 - 185
Target Start/End: Complemental strand, 33450108 - 33449944
Alignment:
Q  21 gtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtgag 120  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||  ||||||||||||| |||||||||| ||||| | ||||||||||||||||||||    
T  33450108 gtggtattcaattgagattttgcacaacttaaaaattgtctattggtattcaaaattctacggattttaatggattattgtgagtaatggattttgtgag 33450009  T
Q  121 actttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctccc 185  Q
    || ||||||| ||||||||||||||||||||||||| || ||||||||| |||||||||||||||    
T  33450008 acattttagtgtaaaatgtatctactaacaatctcacacatagcctcaacacttttctgtctccc 33449944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 23 - 185
Target Start/End: Original strand, 26336225 - 26336387
Alignment:
Q  23 ggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtgagac 122  Q
    |||||||||| |||||||| || |||||||||||||| |||||  ||||||||||||| |||||||||| ||||| | ||||||||||||||||||||||    
T  26336225 ggtattcaattgagattttacacaacttaaaaattgtttattggtattcaaaattctaaggattttaatggattattgtgagtaatggattttgtgagac 26336324  T
Q  123 tttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctccc 185  Q
    |||||||| |||||||||||||| |||||||||| |||||||||  |||||||| ||||||||    
T  26336325 tttttagtgtaaaatgtatctaccaacaatctcacacctagccttgagacttttttgtctccc 26336387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 559 - 707
Target Start/End: Complemental strand, 33449569 - 33449413
Alignment:
Q  559 gtcatcatacttttgacaattaagaaacaacaattgttttagtaaaa-taactagttcgttctttata-------gtgatcaaatgaacaagaaaacaat 650  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||       |||||||||||||||||||||||||    
T  33449569 gtcatcatacttttgacaattaggaaacaacaattgttttagtaaaaatatctagttcgttctttatacatattagtgatcaaatgaacaagaaaacaat 33449470  T
Q  651 cgagacaagagtaaagacagagatagttatgtagcttggaccattgatgaaactatt 707  Q
    ||||| |||  |||||||| |||||||||||||||||||||||| ||||||||||||    
T  33449469 cgagagaaggataaagacaaagatagttatgtagcttggaccatggatgaaactatt 33449413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 20 - 184
Target Start/End: Complemental strand, 42218376 - 42218212
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||| |||| |||||||||| ||||  | ||||||||| |||||||||    
T  42218376 agtggtattcaattgagattttgcataacttaaaaattgtctactgatattcaaaactctacggattttaatggattgttgtgagtaatgaattttgtga 42218277  T
Q  120 gactttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctcc 184  Q
    || | |||||| ||||||||| ||||||||||||||| |||||||||  |||||||||| |||||    
T  42218276 gattgtttagtgtaaaatgtacctactaacaatctcacacctagccttgagacttttctatctcc 42218212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 23 - 185
Target Start/End: Original strand, 45332823 - 45332985
Alignment:
Q  23 ggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtgagac 122  Q
    |||||||||| |||||||| || ||||||||||||||||||||  ||||||||||||| |||||||||| ||||  | ||||||||||||||| ||| ||    
T  45332823 ggtattcaattgagattttacacaacttaaaaattgtctattggtattcaaaattctaaggattttaatggattgttgtgagtaatggattttatgaaac 45332922  T
Q  123 tttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctccc 185  Q
    |||||||| |||||||||||||| |||||||||| |||||||||  |||||||| ||||||||    
T  45332923 tttttagtgtaaaatgtatctaccaacaatctcacacctagccttgagacttttttgtctccc 45332985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 23 - 185
Target Start/End: Original strand, 45340513 - 45340675
Alignment:
Q  23 ggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtgagac 122  Q
    |||||||||| |||||||| || ||||||||||||||||||||  ||||||||||||| |||||||||| ||||  | ||||||||||||||| ||| ||    
T  45340513 ggtattcaattgagattttacacaacttaaaaattgtctattggtattcaaaattctaaggattttaatggattgttgtgagtaatggattttatgaaac 45340612  T
Q  123 tttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctccc 185  Q
    |||||||| |||||||||||||| |||||||||| |||||||||  |||||||| ||||||||    
T  45340613 tttttagtgtaaaatgtatctaccaacaatctcacacctagccttgagacttttttgtctccc 45340675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 20 - 185
Target Start/End: Original strand, 8880598 - 8880763
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    ||||||||||||| ||||||||||||||||||||||||||||| |   |||||||| |||| |||||||||| ||||  | ||||||||| |||||||||    
T  8880598 agtggtattcaattgagattttgcataacttaaaaattgtctactagtattcaaaactctacggattttaatggattgttgtgagtaatgaattttgtga 8880697  T
Q  120 gactttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctccc 185  Q
    || | |||||| ||||||||| ||||||||||||||| |||||||||  |||||||||||||||||    
T  8880698 gattgtttagtgtaaaatgtacctactaacaatctcacacctagccttgagacttttctgtctccc 8880763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 23 - 176
Target Start/End: Original strand, 42720876 - 42721029
Alignment:
Q  23 ggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtgagac 122  Q
    |||||||||| |||||||| || ||||||||||||||||||||  ||||||||||||| |||||||||| | ||  | ||||||||||||||||||||||    
T  42720876 ggtattcaattgagattttacacaacttaaaaattgtctattggtattcaaaattctaaggattttaatgggttgttgtgagtaatggattttgtgagac 42720975  T
Q  123 tttttagtataaaatgtatctactaacaatctcatacctagcctcaagactttt 176  Q
    |||||||| |||||||||||||| |||||||||| |||||||||  ||||||||    
T  42720976 tttttagtgtaaaatgtatctaccaacaatctcacacctagccttgagactttt 42721029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 20 - 184
Target Start/End: Complemental strand, 8583935 - 8583771
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    |||||||||||||  |||||||||||||||||||||||||||| ||  |||||||| |||| |||||||||| ||||  | ||||||||| |||||||||    
T  8583935 agtggtattcaattaagattttgcataacttaaaaattgtctactggtattcaaaactctacggattttaatggattgttgtgagtaatgaattttgtga 8583836  T
Q  120 gactttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctcc 184  Q
    || | |||||| ||||||||| ||||||||||||||| |||||||||  |||||||||| |||||    
T  8583835 gattgtttagtgtaaaatgtacctactaacaatctcacacctagccttgagacttttctatctcc 8583771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 22 - 185
Target Start/End: Original strand, 52109562 - 52109725
Alignment:
Q  22 tggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtgaga 121  Q
    ||||||||||| |||||||||||||||||||||||||| ||  || |||||||| |||| |||||||||| ||||  | |||||||||||||||||||||    
T  52109562 tggtattcaattgagattttgcataacttaaaaattgtataccgatattcaaaactctacggattttaatggattgttgtgagtaatggattttgtgaga 52109661  T
Q  122 ctttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctccc 185  Q
     | |||| | ||||||||| |||||||||||| || |||||||||  |||||||||||||||||    
T  52109662 ttgtttaatgtaaaatgtacctactaacaatcccacacctagccttgagacttttctgtctccc 52109725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 20 - 185
Target Start/End: Original strand, 44930029 - 44930194
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    ||||||||||||| |||||||||||||||||||||||||||||  |  |||||||| |||| |||||||||| ||||  | ||||||| |||||||||||    
T  44930029 agtggtattcaattgagattttgcataacttaaaaattgtctacgggtattcaaaactctacggattttaatggattgttgtgagtaaaggattttgtga 44930128  T
Q  120 gactttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctccc 185  Q
    || | |||||| ||||||||| ||||||||||||||| |||||||||  ||| |||||| ||||||    
T  44930129 gattgtttagtgtaaaatgtacctactaacaatctcacacctagccttgagatttttctatctccc 44930194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 20 - 185
Target Start/End: Original strand, 47685298 - 47685463
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    ||||||||||||| ||||||||||  ||||||||||||||||||||  |||||||||| || |||||||||| ||||  | |||||||| ||||||| ||    
T  47685298 agtggtattcaattgagattttgctcaacttaaaaattgtctattggtattcaaaattgtaaggattttaatggattgttgtgagtaatagattttgcga 47685397  T
Q  120 gactttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctccc 185  Q
    ||||||||||| ||||||||| ||||||||||||||| |||||  ||  |||||||| ||||||||    
T  47685398 gactttttagtgtaaaatgtacctactaacaatctcacacctaaacttgagacttttttgtctccc 47685463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 20 - 162
Target Start/End: Original strand, 54509868 - 54510007
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||  |||||||||| || |||||||||| ||||  ||||   ||||||||||||||    
T  54509868 agtggtattcaattgagattttgcacaacttaaaaattgtctattggtattcaaaattgtaaggattttaatggattgttatg---aatggattttgtga 54509964  T
Q  120 gactttttagtataaaatgtatctactaacaatctcataccta 162  Q
    ||||||||||| ||||||||| ||||||||||||||| |||||    
T  54509965 gactttttagtgtaaaatgtacctactaacaatctcacaccta 54510007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 20 - 183
Target Start/End: Complemental strand, 3435887 - 3435724
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    ||||||||||||| |||||||||||||||||||||||||| |  ||  |||||||| |||| |||||||||| ||||  | |||||||| ||||||||||    
T  3435887 agtggtattcaattgagattttgcataacttaaaaattgtgtgctggtattcaaaactctacggattttaatggattgttgtgagtaatagattttgtga 3435788  T
Q  120 gactttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctc 183  Q
    || | |||||| ||||||||| ||||||||||||||| |||||||||  |||||||||| ||||    
T  3435787 gattgtttagtgtaaaatgtacctactaacaatctcacacctagccttgagacttttctatctc 3435724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 16 - 180
Target Start/End: Original strand, 25935937 - 25936100
Alignment:
Q  16 atctagtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggatttt 115  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||| |   |||||||| ||   | |||||||| ||||  | |||||||||||||||    
T  25935937 atctagtagtattcaattgagattttgcataacttaaaaattgtctactagtattcaaaactcatcgaattttaatggattgttgtgagtaatggatttt 25936036  T
Q  116 gtgagactttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgt 180  Q
    |||||| | |||||| ||||||| | ||| ||||||||||| | |||||||  ||||||||||||    
T  25936037 gtgagattgtttagtgtaaaatgaacctattaacaatctcaca-ctagccttgagacttttctgt 25936100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 40143933 - 40144006
Alignment:
Q  23 ggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgatt 96  Q
    |||||||||| ||||||||||| ||||||||||||||||||||  |||||||||| || | |||||||| ||||    
T  40143933 ggtattcaattgagattttgcacaacttaaaaattgtctattggtattcaaaattgtaagaattttaatggatt 40144006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 185
Target Start/End: Original strand, 40143998 - 40144079
Alignment:
Q  105 taatggatt-ttgtgagactttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctccc 185  Q
    ||||||||| ||||||||||||||||| ||||||||| ||||||||||||||| || || |||  |||||||| ||||||||    
T  40143998 taatggattgttgtgagactttttagtgtaaaatgtacctactaacaatctcacacttaaccttgagacttttttgtctccc 40144079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 112 - 185
Target Start/End: Original strand, 7820292 - 7820365
Alignment:
Q  112 ttttgtgagactttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctccc 185  Q
    |||| ||||| | |||||| ||||||| | ||||||||||||||| |||||||||  |||||||||||||||||    
T  7820292 ttttatgagattgtttagtgtaaaatgcacctactaacaatctcacacctagcctggagacttttctgtctccc 7820365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 102; Significance: 3e-50; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 20 - 185
Target Start/End: Complemental strand, 1928334 - 1928169
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    |||||||||||||  |||||||||| ||||||||||||||||||||  ||||||||||||| |||||||||| ||||  |||||||||||||||||||||    
T  1928334 agtggtattcaattcagattttgcacaacttaaaaattgtctattggtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtga 1928235  T
Q  120 gactttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctccc 185  Q
    ||||||||||| ||||||| ||||||||||||||||| |||||||||   ||||||| ||||||||    
T  1928234 gactttttagtgtaaaatgcatctactaacaatctcacacctagccttgtgacttttttgtctccc 1928169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 20 - 185
Target Start/End: Original strand, 36402401 - 36402566
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||  |||||||||| || |||||||||| ||||  | |||||||||||||||||||    
T  36402401 agtggtattcaattgagattttgcacaacttaaaaattgtctattggtattcaaaattgtaaggattttaatggattgttgtgagtaatggattttgtga 36402500  T
Q  120 gactttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctccc 185  Q
    ||||||||||| ||||||||| ||||||||||||||| | ||| |||  |||||||| ||||||||    
T  36402501 gactttttagtgtaaaatgtacctactaacaatctcacatctaaccttgagacttttttgtctccc 36402566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 20 - 178
Target Start/End: Complemental strand, 26882756 - 26882598
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||  |||||||| ||||  ||||||||| ||||  | |||||||||||||||||||    
T  26882756 agtggtattcaattgagattttgcataacttaaaaattgtctactggtattcaaaactctacagattttaatggattgttgtgagtaatggattttgtga 26882657  T
Q  120 gactttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttct 178  Q
    || | |||||| |||||||||| |||||||||||||| |||||||||  ||||||||||    
T  26882656 gattgtttagtgtaaaatgtatatactaacaatctcacacctagccttgagacttttct 26882598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 23 - 185
Target Start/End: Original strand, 29208912 - 29209074
Alignment:
Q  23 ggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtgagac 122  Q
    |||||||||| |||||||| || ||||||||||||||||||||  ||||||| ||||| |||||||||| ||||  | ||||||||||||||||||||||    
T  29208912 ggtattcaattgagattttacacaacttaaaaattgtctattggtattcaaagttctaaggattttaatggattgttgtgagtaatggattttgtgagac 29209011  T
Q  123 tttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctccc 185  Q
    |||||||| ||| || ||||||| |||||||||| |||||||||  |||||||| ||||||||    
T  29209012 tttttagtgtaacatatatctaccaacaatctcacacctagccttgagacttttttgtctccc 29209074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 20 - 185
Target Start/End: Original strand, 52705547 - 52705712
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||  |||||||| |||| |||||||||| ||||  | |||||||||||||||||||    
T  52705547 agtggtattcaattgagattttgcataacttaaaaattgtctactggtattcaaaactctacggattttaatggattgttgtgagtaatggattttgtga 52705646  T
Q  120 gactttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctccc 185  Q
    || | ||| || |||||||||  ||||||||||||||  |||||||| ||||||||||| ||||||    
T  52705647 gattgtttggtgtaaaatgtacttactaacaatctcacgcctagccttaagacttttctatctccc 52705712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 20 - 176
Target Start/End: Original strand, 45318614 - 45318770
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||  |||||||| |||| |||||||||| ||||  | |||||||||||||||||||    
T  45318614 agtggtattcaattgagattttgcataacttaaaaattgtctactggtattcaaaactctacggattttaatggattgttgtgagtaatggattttgtga 45318713  T
Q  120 gactttttagtataaaatgtatctactaacaatctcatacctagcctcaagactttt 176  Q
    || | |||||| ||||||||| ||||||||||||||| ||||| |||  ||||||||    
T  45318714 gattgtttagtgtaaaatgtacctactaacaatctcacacctaaccttgagactttt 45318770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 20 - 162
Target Start/End: Complemental strand, 33243240 - 33243098
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    ||||||||||||| ||||||||| | ||||||||||||||||||||  |||||||||| || |||||||||| ||||  | |||||||||||||||||||    
T  33243240 agtggtattcaattgagattttgtacaacttaaaaattgtctattggtattcaaaattgtaaggattttaatggattgttgtgagtaatggattttgtga 33243141  T
Q  120 gactttttagtataaaatgtatctactaacaatctcataccta 162  Q
     |||||||| | |||| |||| ||||||||||||||| |||||    
T  33243140 aactttttaatgtaaattgtacctactaacaatctcacaccta 33243098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 20 - 162
Target Start/End: Complemental strand, 33263413 - 33263271
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    ||||||||||||| ||||||||| | ||||||||||||||||||||  |||||||||| || |||||||||| ||||  | |||||||||||||||||||    
T  33263413 agtggtattcaattgagattttgtacaacttaaaaattgtctattggtattcaaaattgtaaggattttaatggattgttgtgagtaatggattttgtga 33263314  T
Q  120 gactttttagtataaaatgtatctactaacaatctcataccta 162  Q
     |||||||| | |||| |||| ||||||||||||||| |||||    
T  33263313 aactttttaatgtaaattgtacctactaacaatctcacaccta 33263271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 20 - 183
Target Start/End: Original strand, 10896954 - 10897117
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    ||||||||||||| ||||||||||  ||||||||||||||||||||  ||||||||||    |||||||||| ||||  |||||||||||||||||||||    
T  10896954 agtggtattcaattgagattttgcccaacttaaaaattgtctattggtattcaaaattggtaggattttaatggattgttatgagtaatggattttgtga 10897053  T
Q  120 gactttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctc 183  Q
     || ||||| | ||||||||| ||||||||||||||| ||||| |||  | |||||| ||||||    
T  10897054 aacattttaatgtaaaatgtacctactaacaatctcacacctaaccttgacacttttttgtctc 10897117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 82 - 162
Target Start/End: Original strand, 9831782 - 9831862
Alignment:
Q  82 ggattttaatcgattaatatgagtaatggattttgtgagactttttagtataaaatgtatctactaacaatctcataccta 162  Q
    |||||||||| ||||  | |||||||||||||||||||||||||||||| |||||| ||  |||||||||||||| |||||    
T  9831782 ggattttaatggattgttgtgagtaatggattttgtgagactttttagtgtaaaatatacttactaacaatctcacaccta 9831862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 9831444 - 9831501
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaatt 77  Q
    ||||||||||||| ||||||||||| |||||| |||||||||||||  ||||||||||    
T  9831444 agtggtattcaattgagattttgcacaacttacaaattgtctattggtattcaaaatt 9831501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 83 - 166
Target Start/End: Original strand, 45535001 - 45535084
Alignment:
Q  83 gattttaatcgattaatatgagtaatggattttgtgagactttttagtataaaatgtatctactaacaatctcatacctagcct 166  Q
    ||||||||| ||||  | ||||||||||||||| ||||| | || ||| ||||||||| ||||||||||||||| || ||||||    
T  45535001 gattttaatggattgttgtgagtaatggattttttgagattgttgagtgtaaaatgtacctactaacaatctcacacgtagcct 45535084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 7e-48; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 20 - 185
Target Start/End: Complemental strand, 40265211 - 40265046
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||  |||||||| ||||||||||||||| ||||  | |||||||||||||||||||    
T  40265211 agtggtattcaattgagattttgcataacttaaaaattgtctaatggtattcaaaactctatggattttaatggattgttgtgagtaatggattttgtga 40265112  T
Q  120 gactttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctccc 185  Q
    || | |||||| ||||||||| ||||||||||||||| |||||||||  |||||||||| ||||||    
T  40265111 gattgtttagtgtaaaatgtacctactaacaatctcacacctagccttgagacttttctatctccc 40265046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 21 - 186
Target Start/End: Original strand, 8502787 - 8502952
Alignment:
Q  21 gtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtgag 120  Q
    ||||||||||||  |||||||||| ||||||||||||||||||||  ||| ||||||||| |||||||||| ||||  | ||||||||||||||| ||||    
T  8502787 gtggtattcaattaagattttgcacaacttaaaaattgtctattggtatttaaaattctacggattttaatggattgttgtgagtaatggattttatgag 8502886  T
Q  121 actttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctcccc 186  Q
    |||||||||| ||||||||| ||||||||||||||| || |||||| |||||||||| ||||||||    
T  8502887 actttttagtgtaaaatgtacctactaacaatctcacacatagccttaagacttttccgtctcccc 8502952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 20 - 185
Target Start/End: Complemental strand, 10802701 - 10802536
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    ||||||||||||| ||||||||||||||||||||||||||||| |   |||||||| |||| |||||||||| ||||  | |||||||||||||||||||    
T  10802701 agtggtattcaattgagattttgcataacttaaaaattgtctactagtattcaaaactctacggattttaatggattgttgtgagtaatggattttgtga 10802602  T
Q  120 gactttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctccc 185  Q
    || | |||||| ||||||||| ||||||||||||||| |||||||||  |||||||||||||||||    
T  10802601 gattgtttagtgtaaaatgtacctactaacaatctcacacctagccttgagacttttctgtctccc 10802536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 20 - 185
Target Start/End: Original strand, 7148194 - 7148359
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    ||||||||||||| |||||||||||||||||| |||||||||| ||  |||||||| |||| |||||||||| ||||  | |||||||||||||||||||    
T  7148194 agtggtattcaattgagattttgcataacttagaaattgtctactggcattcaaaactctacggattttaatggattgttgtgagtaatggattttgtga 7148293  T
Q  120 gactttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctccc 185  Q
    || | |||||| ||||||||| ||||||||||||||| |||||||||  |||||||||| ||||||    
T  7148294 gattgtttagtgtaaaatgtacctactaacaatctcacacctagccttgagacttttctatctccc 7148359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 24 - 185
Target Start/End: Complemental strand, 37567298 - 37567137
Alignment:
Q  24 gtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtgagact 123  Q
    ||||||||| ||||||||||| ||||||||||||||||||||  |||||||||| || ||||||||||  |||  | |||||||||||||||||||| ||    
T  37567298 gtattcaattgagattttgcacaacttaaaaattgtctattggtattcaaaattgtacggattttaatgaattgttgtgagtaatggattttgtgaggct 37567199  T
Q  124 ttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctccc 185  Q
    ||||||| ||||||||||||||||||||||||| ||||| |||  |||||||| ||||||||    
T  37567198 ttttagtgtaaaatgtatctactaacaatctcacacctaaccttgagacttttttgtctccc 37567137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 20 - 183
Target Start/End: Original strand, 4655201 - 4655364
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    ||||||||||||| |||||||||||||||||||||||||||||  |  |||||||| |||| |||||||||| ||||  |||||||||||||||||||||    
T  4655201 agtggtattcaattgagattttgcataacttaaaaattgtctaccggtattcaaaactctacggattttaatggattgttatgagtaatggattttgtga 4655300  T
Q  120 gactttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctc 183  Q
    || | |||||| |||||||||  |||||||||||||| |||||||||  |||||||||| ||||    
T  4655301 gattgtttagtgtaaaatgtacatactaacaatctcacacctagccttgagacttttctatctc 4655364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 20 - 185
Target Start/End: Original strand, 2112945 - 2113110
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    ||||||||||||| ||||||| ||||||||||||||||||||| ||  |||||||| |||| |||||||||| ||||  | |||||||||||||||||||    
T  2112945 agtggtattcaattgagatttcgcataacttaaaaattgtctactggtattcaaaactctacggattttaatggattgttgtgagtaatggattttgtga 2113044  T
Q  120 gactttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctccc 185  Q
    || | |||||| ||||||||| ||||| ||||||||| ||||||| |  |||||||||||||||||    
T  2113045 gattgtttagtgtaaaatgtacctactgacaatctcacacctagcattgagacttttctgtctccc 2113110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 20 - 185
Target Start/End: Complemental strand, 29260206 - 29260041
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||  |||||||| |||| |||||||||| ||||  | |||||||||||||||||||    
T  29260206 agtggtattcaattgagattttgcataacttaaaaattgtctactggtattcaaaactctacggattttaatggattgttgtgagtaatggattttgtga 29260107  T
Q  120 gactttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctccc 185  Q
    || | |||||| |||||||||  |||||||||||||| ||||| |||  |||||||||| ||||||    
T  29260106 gattgtttagtgtaaaatgtacgtactaacaatctcacacctaaccttgagacttttctatctccc 29260041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 20 - 185
Target Start/End: Complemental strand, 30382604 - 30382439
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||  |||||||||| || |||||||||| ||||  | ||||||||  |||||||||    
T  30382604 agtggtattcaattgagattttgcacaacttaaaaattgtctattggtattcaaaattgtaaggattttaatggattgttgtgagtaatcaattttgtga 30382505  T
Q  120 gactttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctccc 185  Q
    ||||||||||| ||||||||| ||||||||||||||| | ||| |||  |||||||| ||||||||    
T  30382504 gactttttagtgtaaaatgtacctactaacaatctcacatctaaccttgagacttttttgtctccc 30382439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 20 - 185
Target Start/End: Complemental strand, 41386800 - 41386635
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    ||||||||||||| ||||||||||||||||||||||||||||| |   |||||||| |||| |||||||||| ||||  | ||||||||||||||| |||    
T  41386800 agtggtattcaattgagattttgcataacttaaaaattgtctactagtattcaaaactctacggattttaatggattgttgtgagtaatggattttatga 41386701  T
Q  120 gactttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctccc 185  Q
    || | |||||| ||||||||| ||||||||||||||| |||||||||  |||||||||| ||||||    
T  41386700 gattgtttagtgtaaaatgtacctactaacaatctcacacctagccttgagacttttctatctccc 41386635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 22 - 166
Target Start/End: Complemental strand, 4302736 - 4302592
Alignment:
Q  22 tggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtgaga 121  Q
    ||||||||||| ||||||||||| |||||||||||||||||||   |||||||||| || |||||||||| ||||  | |||||||||||||| | ||||    
T  4302736 tggtattcaattgagattttgcacaacttaaaaattgtctattagtattcaaaattgtaaggattttaatggattgttgtgagtaatggatttagcgaga 4302637  T
Q  122 ctttttagtataaaatgtatctactaacaatctcatacctagcct 166  Q
    ||||||||| ||||||||| ||||||||||||||| |||||||||    
T  4302636 ctttttagtgtaaaatgtacctactaacaatctcacacctagcct 4302592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 561 - 707
Target Start/End: Original strand, 8503343 - 8503496
Alignment:
Q  561 catcatacttttgacaattaagaaacaacaattgttttagtaaaataactagttcgttctttata-------gtgatcaaatgaacaagaaaacaatcga 653  Q
    |||||||||||||||||||| |||||||||||||| ||  |||||||||||||||||||||||||       ||||||||||||| ||||||||||||||    
T  8503343 catcatacttttgacaattaggaaacaacaattgtgtttataaaataactagttcgttctttatacatattagtgatcaaatgaataagaaaacaatcga 8503442  T
Q  654 gacaagagtaaagacagagatagttatgtagcttggaccattgatgaaactatt 707  Q
    || ||| ||||||||| ||||||||||  |||||||| ||| ||||||||||||    
T  8503443 gagaagggtaaagacaaagatagttattcagcttggatcatggatgaaactatt 8503496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 23 - 185
Target Start/End: Original strand, 42275129 - 42275292
Alignment:
Q  23 ggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtgagac 122  Q
    |||||||||| ||||||||||||||||||||||||||||| |   |||||||| |||| ||||||| || ||||  | |||||||||||||||||||||     
T  42275129 ggtattcaattgagattttgcataacttaaaaattgtctactagtattcaaaactctacggatttttatggattgttgtgagtaatggattttgtgagat 42275228  T
Q  123 tttttagtataaaatgtatctactaa-caatctcatacctagcctcaagacttttctgtctccc 185  Q
    | |||||| ||||||||| ||||||| |||||||| |||||||||  |||||||||||||||||    
T  42275229 tgtttagtgtaaaatgtacctactaaccaatctcacacctagccttgagacttttctgtctccc 42275292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 20 - 162
Target Start/End: Original strand, 9457697 - 9457839
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    ||||||||||||| |||||||||||||||||||||||||||||| |  |||||||| |||| |||||||||| ||||  | ||||||||||||||| |||    
T  9457697 agtggtattcaattgagattttgcataacttaaaaattgtctatcggtattcaaaactctacggattttaatggattgttgtgagtaatggattttatga 9457796  T
Q  120 gactttttagtataaaatgtatctactaacaatctcataccta 162  Q
    || | |||||| ||||||||| ||||||||||||||| |||||    
T  9457797 gattgtttagtgtaaaatgtacctactaacaatctcacaccta 9457839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 24 - 188
Target Start/End: Original strand, 35142200 - 35142364
Alignment:
Q  24 gtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtgagact 123  Q
    |||||||||  |||||||| | ||||||||||||||||||||  |||||||||  || |||||||| | ||||  | ||||||||||||||| |||||||    
T  35142200 gtattcaattaagattttgtacaacttaaaaattgtctattggtattcaaaatattacggattttattagattgttgtgagtaatggattttatgagact 35142299  T
Q  124 ttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctccccct 188  Q
    ||||||| |||||| || ||||||||| ||||| | |||||||||||||||||| ||||||||||    
T  35142300 ttttagtgtaaaatctacctactaacactctcacaactagcctcaagacttttcggtctccccct 35142364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 20 - 185
Target Start/End: Original strand, 28619998 - 28620163
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||  |||||||| |||| |||||||||| ||||  | ||||||||| | |||||||    
T  28619998 agtggtattcaattgagattttgcataacttaaaaattgtctactggtattcaaaactctacggattttaatggattgttgtgagtaatgaactttgtga 28620097  T
Q  120 gactttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctccc 185  Q
    || | |||| | || |||||| ||||||||||||||| |||||  ||  |||||||||||||||||    
T  28620098 gattgtttaatgtacaatgtacctactaacaatctcacacctaatcttgagacttttctgtctccc 28620163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 20 - 185
Target Start/End: Complemental strand, 43605294 - 43605129
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    ||||||||||||| ||||||| ||||||||||||||||||||  |   |||||||| |||| |||||||||| ||||  | |||||||||||||||||||    
T  43605294 agtggtattcaattgagatttcgcataacttaaaaattgtctgctagtattcaaaactctacggattttaatggattgttgtgagtaatggattttgtga 43605195  T
Q  120 gactttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctccc 185  Q
    || | |||| | |||||||||  |||||||||||||| |||||||||  |||||||| ||||||||    
T  43605194 gattgtttaatgtaaaatgtacttactaacaatctcacacctagccttgagacttttttgtctccc 43605129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 20 - 185
Target Start/End: Complemental strand, 41965728 - 41965565
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    ||||||||||||| ||||||||||||||||||||  ||||||| ||  |||||||| ||||   |||||||| ||||  | |||||||||||||||||||    
T  41965728 agtggtattcaattgagattttgcataacttaaa--ttgtctactggtattcaaaactctacatattttaatggattgttgtgagtaatggattttgtga 41965631  T
Q  120 gactttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctccc 185  Q
    || | |||||| ||||||||| ||||||||||||||  |||||||||  |||||||||| ||||||    
T  41965630 gattatttagtgtaaaatgtacctactaacaatctcgcacctagccttgagacttttctatctccc 41965565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 20 - 155
Target Start/End: Original strand, 9209190 - 9209325
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    ||||||||||||| || |||||| | ||||||||||||||||||||  |||||||| |||| |||||||||| | ||  | || |||||  |||||||||    
T  9209190 agtggtattcaattgaaattttggacaacttaaaaattgtctattggtattcaaaactctaaggattttaatagtttgttgtgggtaatttattttgtga 9209289  T
Q  120 gactttttagtataaaatgtatctactaacaatctc 155  Q
    ||||||||||| ||||||||| ||||||||||||||    
T  9209290 gactttttagtgtaaaatgtacctactaacaatctc 9209325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 561 - 625
Target Start/End: Original strand, 35142729 - 35142793
Alignment:
Q  561 catcatacttttgacaattaagaaacaacaattgttttagtaaaataactagttcgttctttata 625  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  35142729 catcatacttttgacaattaggaaacaacaattgttttagtaaaataactagttcgttctttata 35142793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 186
Target Start/End: Complemental strand, 40013346 - 40013263
Alignment:
Q  99 tatgagtaatggattttgtgagactttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctcccc 186  Q
    |||||||||||||||||     ||||||||||||||||| || ||||||||||||||| || | ||||  ||||||||||||||||||    
T  40013346 tatgagtaatggatttta----actttttagtataaaatatacctactaacaatctcacacttggccttgagacttttctgtctcccc 40013263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 1605939 - 1605902
Alignment:
Q  24 gtattcaatcgagattttgcataacttaaaaattgtct 61  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  1605939 gtattcaattgagattttgcataacttaaaaattgtct 1605902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 98; Significance: 7e-48; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 16 - 185
Target Start/End: Original strand, 30878002 - 30878171
Alignment:
Q  16 atctagtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggatttt 115  Q
    |||||||||||||||||  |||||||| | | ||||||||||||||||||  ||||||||||||| |||||||||| ||||  |||||||||||||||||    
T  30878002 atctagtggtattcaattcagattttgtacagcttaaaaattgtctattggtattcaaaattctaaggattttaatggattgttatgagtaatggatttt 30878101  T
Q  116 gtgagactttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctccc 185  Q
    ||||||||||||||| ||||||| ||||||||||||||||| | |||||||  |||||||| ||||||||    
T  30878102 gtgagactttttagtgtaaaatgcatctactaacaatctcacatctagccttgagacttttttgtctccc 30878171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 20 - 185
Target Start/End: Complemental strand, 6476643 - 6476478
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    ||||||||||||| ||||||||||||||||||||||||||||| |   |||||||| |||| |||||||||| ||||  | |||||||||||||||||||    
T  6476643 agtggtattcaattgagattttgcataacttaaaaattgtctactagtattcaaaactctacggattttaatggattgttgtgagtaatggattttgtga 6476544  T
Q  120 gactttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctccc 185  Q
    || | |||||| ||||||||| ||||||||||||||| |||||||||  |||||||||||||||||    
T  6476543 gattgtttagtgtaaaatgtaactactaacaatctcacacctagccttgagacttttctgtctccc 6476478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 20 - 185
Target Start/End: Complemental strand, 10643944 - 10643777
Alignment:
Q  20 agtggtattcaatcgagattttg--cataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgt 117  Q
    ||||||||||||| |||||||||  || ||||||||||||||||||||  | |||||||| || |||||||||| ||||  | |||||||||||||||||    
T  10643944 agtggtattcaattgagattttgatcacaacttaaaaattgtctattggtaatcaaaattgtaaggattttaatggattgttgtgagtaatggattttgt 10643845  T
Q  118 gagactttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctccc 185  Q
    ||||||||||||| ||||||||| ||||||||||||||| |||||  || ||||||||| ||||||||    
T  10643844 gagactttttagtgtaaaatgtacctactaacaatctcacacctaatcttaagacttttttgtctccc 10643777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 20 - 162
Target Start/End: Complemental strand, 29834215 - 29834073
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    ||||||||||||| |||||||||||||||||||||||||||||| |  |||||||| |||| |||||||||| ||||  | ||||||||||||||| |||    
T  29834215 agtggtattcaattgagattttgcataacttaaaaattgtctatcggtattcaaaactctacggattttaatggattgttgtgagtaatggattttatga 29834116  T
Q  120 gactttttagtataaaatgtatctactaacaatctcataccta 162  Q
    || | |||||| ||||||||| ||||||||||||||| |||||    
T  29834115 gattgtttagtgtaaaatgtacctactaacaatctcacaccta 29834073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 20 - 162
Target Start/End: Complemental strand, 29865649 - 29865507
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    ||||||||||||| |||||||||||||||||||||||||||||| |  |||||||| |||| |||||||||| ||||  | ||||||||||||||| |||    
T  29865649 agtggtattcaattgagattttgcataacttaaaaattgtctatcggtattcaaaactctacggattttaatggattgttgtgagtaatggattttatga 29865550  T
Q  120 gactttttagtataaaatgtatctactaacaatctcataccta 162  Q
    || | |||||| ||||||||| ||||||||||||||| |||||    
T  29865549 gattgtttagtgtaaaatgtacctactaacaatctcacaccta 29865507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 22 - 126
Target Start/End: Complemental strand, 7858302 - 7858198
Alignment:
Q  22 tggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtgaga 121  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||  |||  | |||||||| ||||||||||||    
T  7858302 tggtattcaattgagattttgcacaacttaaaaattgtctattgatattcaaaattctacggattttaatgcattgttgtgagtaatagattttgtgaga 7858203  T
Q  122 ctttt 126  Q
    |||||    
T  7858202 ctttt 7858198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 20 - 185
Target Start/End: Complemental strand, 3110215 - 3110050
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    |||| |||||||| |||||||||| |||||| |||||||| |   |  |||||||| |||| |||||||||| ||||  | |||||||||||||||||||    
T  3110215 agtgatattcaattgagattttgcctaacttgaaaattgtgtgcagttattcaaaactctacggattttaatggattgttgtgagtaatggattttgtga 3110116  T
Q  120 gactttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctccc 185  Q
    || | |||||| |||||||||  |||| ||||||||  ||||||  | ||||||||||| ||||||    
T  3110115 gattgtttagtgtaaaatgtacatactgacaatctcgcacctagtattaagacttttctatctccc 3110050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 7e-48; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 21 - 186
Target Start/End: Original strand, 17518584 - 17518749
Alignment:
Q  21 gtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtgag 120  Q
    ||||||||||||  |||||||||| |||||||||||||| |||||  ||||||||||||| |||||||||| || |  |  |||||||||||||||||||    
T  17518584 gtggtattcaattaagattttgcacaacttaaaaattgtttattgggattcaaaattctacggattttaatggaatgttgcgagtaatggattttgtgag 17518683  T
Q  121 actttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctcccc 186  Q
    |||||||||| ||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||    
T  17518684 actttttagtgtaaaatgtacctactaacaatctcacacccagcctcaagacttttctgtctcccc 17518749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 20 - 156
Target Start/End: Complemental strand, 6828722 - 6828586
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||| || |||||||||| ||||  |||||||||||||||||||||    
T  6828722 agtggtattcaattgagattttgcacaacttaaaaattgtctattgatattcaaaattgtaaggattttaatggattgttatgagtaatggattttgtga 6828623  T
Q  120 gactttttagtataaaatgtatctactaacaatctca 156  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  6828622 gactttttagtgtaaaatgtacctactaacaatctca 6828586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 561 - 707
Target Start/End: Original strand, 17519114 - 17519267
Alignment:
Q  561 catcatacttttgacaattaagaaacaacaattgttttagtaaaataactagttcgttctttata-------gtgatcaaatgaacaagaaaacaatcga 653  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||       ||||||||||||| ||||||||||||||    
T  17519114 catcatacttttgacaattaggaaacaacaattgatttagtaaaataactagttcgttctttatacatattagtgatcaaatgaataagaaaacaatcga 17519213  T
Q  654 gacaagagtaaagacagagatagttatgtagcttggaccattgatgaaactatt 707  Q
    || ||| ||||||||| ||||||||||| |||||||||||| ||||||||||||    
T  17519214 gagaagggtaaagacaaagatagttatgcagcttggaccatggatgaaactatt 17519267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 16 - 185
Target Start/End: Original strand, 40410740 - 40410909
Alignment:
Q  16 atctagtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggatttt 115  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| |   |||||||| |||| |||||||||| ||||  | |||||||||||||||    
T  40410740 atctagtggtattcaattgagattttgcataacttaaaaattgtctactcgtattcaaaactctacggattttaatggattgttgtgagtaatggatttt 40410839  T
Q  116 gtgagactttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctccc 185  Q
    |||||| | |||||| ||||||||| ||||||||||||||| |||||| ||  |||||||||| ||||||    
T  40410840 gtgagattgtttagtgtaaaatgtacctactaacaatctcacacctagacttgagacttttctatctccc 40410909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 21 - 186
Target Start/End: Original strand, 10571266 - 10571431
Alignment:
Q  21 gtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtgag 120  Q
    ||||||||||||  |||||||| | ||||||||||||||||||||  ||||||||||||||| | |||||| ||||  | | || ||||||||||||||     
T  10571266 gtggtattcaattaagattttgtacaacttaaaaattgtctattggtattcaaaattctatgaaatttaatagattgttgtcaggaatggattttgtgaa 10571365  T
Q  121 actttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctcccc 186  Q
    ||||||||||||||||||||  |||||||||||||| ||||| ||| |||||||||||||||||||    
T  10571366 actttttagtataaaatgtacatactaacaatctcacacctaaccttaagacttttctgtctcccc 10571431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 561 - 693
Target Start/End: Original strand, 10571831 - 10571970
Alignment:
Q  561 catcatacttttgacaattaagaaacaacaattgttttagtaaaataactagttcgttcttt-------atagtgatcaaatgaacaagaaaacaatcga 653  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||| ||| |||    
T  10571831 catcatacttttgacaattaggaaacaacaattgttttagtaaaataactagttcgttctttgtacatattagtgatcaaatgaacaagaaagcaaccga 10571930  T
Q  654 gacaagagtaaagacagagatagttatgtagcttggacca 693  Q
    || ||  ||||||||| ||||| ||||| |||||||||||    
T  10571931 gagaatggtaaagacaaagatatttatgcagcttggacca 10571970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 130
Target Start/End: Complemental strand, 2276133 - 2276025
Alignment:
Q  22 tggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtgaga 121  Q
    |||||||||||  | ||||  ||| |||||  ||||||||||||| |||||||| ||||| ||||||||| ||||  | ||  |||||||||||||||||    
T  2276133 tggtattcaattaaaatttctcatgacttatgaattgtctattgatattcaaaagtctatagattttaatggattcttttgtataatggattttgtgaga 2276034  T
Q  122 ctttttagt 130  Q
     ||||||||    
T  2276033 ttttttagt 2276025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 130
Target Start/End: Complemental strand, 6902605 - 6902491
Alignment:
Q  16 atctagtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggatttt 115  Q
    |||| ||||||||||||| |||||||  | |||||||||||||||| |||  |||||||| | ||| ||||| ||| ||||| |  |   ||| ||||||    
T  6902605 atctggtggtattcaatcaagattttttacaacttaaaaattgtctcttggtattcaaaaatgtattgatttcaatggattacttggtagaattgatttt 6902506  T
Q  116 gtgagactttttagt 130  Q
    |||||||||||||||    
T  6902505 gtgagactttttagt 6902491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 7e-48; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 20 - 185
Target Start/End: Complemental strand, 20157687 - 20157522
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    |||||||||||||  |||||||||| |||||||| |||||||||||  ||||||||||||| |||||||||| ||||  |||||||||||||||||||||    
T  20157687 agtggtattcaattcagattttgcacaacttaaatattgtctattggtattcaaaattctaaggattttaatagattgttatgagtaatggattttgtga 20157588  T
Q  120 gactttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctccc 185  Q
    ||||||||||| ||||||| ||||||||||||||||| ||||||| |  |||||||| ||||||||    
T  20157587 gactttttagtgtaaaatgcatctactaacaatctcacacctagctttgagacttttttgtctccc 20157522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 20 - 182
Target Start/End: Complemental strand, 34028862 - 34028700
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    |||||||||||||  |||||||||| ||||||||||||||||||||  |||||||||| || |||||||||| ||||  || ||||||||||||||||||    
T  34028862 agtggtattcaattcagattttgcacaacttaaaaattgtctattggtattcaaaattataaggattttaatggattgttacgagtaatggattttgtga 34028763  T
Q  120 gactttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtct 182  Q
    ||||||||||| ||||||| ||||||||||||||||| |||||||||  |||||||| |||||    
T  34028762 gactttttagtgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtct 34028700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 20 - 185
Target Start/End: Complemental strand, 24193416 - 24193251
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||  |||||||||| || |||||||||| ||||  | |||||||||||||||||||    
T  24193416 agtggtattcaattgagattttgcacaacttaaaaattgtctattggtattcaaaattgtaaggattttaatggattgttgtgagtaatggattttgtga 24193317  T
Q  120 gactttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctccc 185  Q
    ||||||||||| ||||||||| ||||||||||||||| || || |||  |||||||| ||||||||    
T  24193316 gactttttagtgtaaaatgtacctactaacaatctcacacttaaccttgagacttttttgtctccc 24193251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 20 - 185
Target Start/End: Original strand, 29941099 - 29941264
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||  |||||||| |||| |||||||||| ||||  | |||||||||||||||||||    
T  29941099 agtggtattcaattgagattttgcataacttaaaaattgtctactggtattcaaaactctacggattttaatggattgttgtgagtaatggattttgtga 29941198  T
Q  120 gactttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctccc 185  Q
    || | |||||| ||||||||| ||||||||||||||| |||||||||  |||||||||| ||||||    
T  29941199 gattgtttagtgtaaaatgtacctactaacaatctcacacctagccttgagacttttctatctccc 29941264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 20 - 185
Target Start/End: Original strand, 11534989 - 11535154
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    ||||| ||||||| ||||||||||| ||||||||||||||||||||  |||||||||| || |||||||||| ||||  | |||||||||||||||||||    
T  11534989 agtggaattcaattgagattttgcacaacttaaaaattgtctattggtattcaaaattgtaaggattttaatggattgttgtgagtaatggattttgtga 11535088  T
Q  120 gactttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctccc 185  Q
    ||||||||||| ||||||||| ||||||||||||||| || || |||  |||||||| ||||||||    
T  11535089 gactttttagtgtaaaatgtacctactaacaatctcacacataaccttgagacttttttgtctccc 11535154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 20 - 185
Target Start/End: Complemental strand, 6289431 - 6289266
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    ||||||||||||| ||||||||||||||||||||||||||||  |   |||||||| |||| |||||||||| ||||  | |||||||||||||||||||    
T  6289431 agtggtattcaattgagattttgcataacttaaaaattgtctgctagtattcaaaactctacggattttaatggattgttgtgagtaatggattttgtga 6289332  T
Q  120 gactttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctccc 185  Q
    || | |||||| ||||||||| ||||||||||||||| |||||||||  |||||||| ||||||||    
T  6289331 gattgtttagtgtaaaatgtacctactaacaatctcacacctagccttgagacttttttgtctccc 6289266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 21 - 188
Target Start/End: Original strand, 24193704 - 24193878
Alignment:
Q  21 gtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatc-------gattaatatgagtaatggatt 113  Q
    |||||||||||| ||||||||||| |||||||||| ||| |||||  ||||||||||||| | ||||||||        ||||  | |||||||||||||    
T  24193704 gtggtattcaattgagattttgcacaacttaaaaactgtttattggtattcaaaattctacgaattttaatttttaatggattgctgtgagtaatggatt 24193803  T
Q  114 ttgtgagactttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctccccct 188  Q
    ||||||||||||||||| ||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||    
T  24193804 ttgtgagactttttagtgtaaaatgtacctactaacaatctcacacttagcctcaagacttttctgtctccccct 24193878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 23 - 185
Target Start/End: Complemental strand, 11998344 - 11998183
Alignment:
Q  23 ggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtgagac 122  Q
    |||||||||| |||||||| || ||||||||||||||||||||  ||||||||||||| |||||||||| | ||  | ||||||||||||||||||||||    
T  11998344 ggtattcaattgagattttacacaacttaaaaattgtctattggtattcaaaattctaaggattttaatggtttgttgtgagtaatggattttgtgagac 11998245  T
Q  123 tttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctccc 185  Q
    |||||||| |||||||||||||| |||||||||| ||| |||||  ||| |||| ||||||||    
T  11998244 tttttagtgtaaaatgtatctaccaacaatctcacacc-agccttgagatttttttgtctccc 11998183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 20 - 185
Target Start/End: Original strand, 45547085 - 45547250
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    ||||||||||||| ||||||| ||||||||||||||||||||| ||  |||||||| |||| |||||||||| ||||  | | |||||||||||||||||    
T  45547085 agtggtattcaattgagatttagcataacttaaaaattgtctactggtattcaaaactctacggattttaatggattgttgtaagtaatggattttgtga 45547184  T
Q  120 gactttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctccc 185  Q
    || | |||||| ||||||||| ||||||||||||||| ||||| |||  |||||||| | ||||||    
T  45547185 gattgtttagtgtaaaatgtacctactaacaatctcacacctaaccttgagacttttatatctccc 45547250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 559 - 692
Target Start/End: Original strand, 24194258 - 24194384
Alignment:
Q  559 gtcatcatacttttgacaattaagaaacaacaattgttttagtaaaataactagttcgttctttatagtgatcaaatgaacaagaaaacaatcgagacaa 658  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||||  ||       | |  |||||||||||||||||||||||||||||||| ||    
T  24194258 gtcatcatacttttgacaattaggaaataacaattgttttagtaaaatatata-------catattagtgatcaaatgaacaagaaaacaatcgagagaa 24194350  T
Q  659 gagtaaagacagagatagttatgtagcttggacc 692  Q
    | ||| | | | ||||||||||| ||||||||||    
T  24194351 gggtataaataaagatagttatgaagcttggacc 24194384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 68 - 146
Target Start/End: Original strand, 45485553 - 45485631
Alignment:
Q  68 attcaaaattctatggattttaatcgattaatatgagtaatggattttgtgagactttttagtataaaatgtatctact 146  Q
    |||||||||||||||||||||||| ||||  | ||||||||||||||||||||| | |||||  ||||||||| |||||    
T  45485553 attcaaaattctatggattttaatggattgttgtgagtaatggattttgtgagattgtttagcgtaaaatgtacctact 45485631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 21 - 128
Target Start/End: Original strand, 2085700 - 2085807
Alignment:
Q  21 gtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtgag 120  Q
    |||||||||||  |||||||| | ||||||| ||| ||||| |||| |||||||| | | | ||||||||| ||||| | |  | |||||||||||||||    
T  2085700 gtggtattcaaatgagattttccctaacttataaaatgtctcttgatattcaaaagtatgtagattttaatagattattttacggaatggattttgtgag 2085799  T
Q  121 acttttta 128  Q
    ||||||||    
T  2085800 acttttta 2085807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 159
Target Start/End: Complemental strand, 38822862 - 38822724
Alignment:
Q  21 gtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtgag 120  Q
    ||||||||| ||| ||||||| || |||||||||||||||| |||  ||| |||| | ||| ||||| ||| ||||| |  |  ||||||||||||||||    
T  38822862 gtggtattcgatcaagatttttcacaacttaaaaattgtctcttggtattaaaaaatgtatagatttcaatggattacttggtataatggattttgtgag 38822763  T
Q  121 actttttagtataaaatgtatctactaacaatctcatac 159  Q
    | ||||||||  ||||| |    ||||||||||||||||    
T  38822762 attttttagttgaaaattttaaaactaacaatctcatac 38822724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 94; Significance: 2e-45; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 20 - 185
Target Start/End: Original strand, 152012 - 152177
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||  |||||||| |||| |||||||||| ||||  | |||||||||||||||||||    
T  152012 agtggtattcaattgagattttgcataacttaaaaattgtctaatggtattcaaaactctacggattttaatggattgttgtgagtaatggattttgtga 152111  T
Q  120 gactttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctccc 185  Q
    || | |||||| ||||||||| ||||||||||||||| |||||||||  |||||||||| ||||||    
T  152112 gattgtttagtgtaaaatgtacctactaacaatctcacacctagccttgagacttttctatctccc 152177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 20 - 185
Target Start/End: Complemental strand, 43057611 - 43057446
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||  |||||||| |||| |||||||||| ||||  | |||||||||||||||||||    
T  43057611 agtggtattcaattgagattttgcataacttaaaaattgtctactggtattcaaaactctacggattttaatggattgttgtgagtaatggattttgtga 43057512  T
Q  120 gactttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctccc 185  Q
    || | |||||| ||||||||| ||||||||||||||| |||||||||  |||||||||| ||||||    
T  43057511 gattgtttagtgtaaaatgtacctactaacaatctcacacctagccttgagacttttctatctccc 43057446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 20 - 164
Target Start/End: Original strand, 40097248 - 40097392
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    |||||||||||||  |||||||||| ||||||||||||||||||||  ||||||||||||| |||||||||| ||||  ||||| |||||||||||||||    
T  40097248 agtggtattcaattcagattttgcacaacttaaaaattgtctattggtattcaaaattctaaggattttaatggattgttatgactaatggattttgtga 40097347  T
Q  120 gactttttagtataaaatgtatctactaacaatctcatacctagc 164  Q
    ||||||||| | ||||||| ||||||||||||||||| |||||||    
T  40097348 gactttttaatgtaaaatgcatctactaacaatctcacacctagc 40097392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 20 - 185
Target Start/End: Complemental strand, 35090036 - 35089871
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||  |||||||| |||| |||||||||| ||||  | ||||||||| |||||||||    
T  35090036 agtggtattcaattgagattttgcataacttaaaaattgtctactggtattcaaaactctacggattttaatggattgttgtgagtaatgaattttgtga 35089937  T
Q  120 gactttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctccc 185  Q
    || | ||| |||||||||||| ||||||||||||||| ||||| |||  |||||||||| ||||||    
T  35089936 gattgtttggtataaaatgtacctactaacaatctcacacctaaccttgagacttttctatctccc 35089871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 20 - 185
Target Start/End: Original strand, 30110957 - 30111122
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    ||||||||||||| ||||||||||||||||||||||||||||  |   |||||||| |||| |||||||||| ||||  | |||||||||||||||||||    
T  30110957 agtggtattcaattgagattttgcataacttaaaaattgtctgctattattcaaaactctacggattttaatggattgttgtgagtaatggattttgtga 30111056  T
Q  120 gactttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctccc 185  Q
    || | |||||| ||||||||||||| ||||||||||| ||||| |||  |||||||| ||||||||    
T  30111057 gattgtttagtgtaaaatgtatctattaacaatctcacacctaaccttgagacttttttgtctccc 30111122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 20 - 185
Target Start/End: Complemental strand, 27418572 - 27418407
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    ||||||||||||| ||||||||||||||||||||||||||||  |   | |||||| |||| |||||||||| ||||  | |||||||||||||||||||    
T  27418572 agtggtattcaattgagattttgcataacttaaaaattgtctgctagtaatcaaaactctacggattttaatggattgttgtgagtaatggattttgtga 27418473  T
Q  120 gactttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctccc 185  Q
    || | |||||| ||||||||||||| ||||||||||| ||||| |||  ||||||||  |||||||    
T  27418472 gattgtttagtgtaaaatgtatctattaacaatctcacacctaaccttgagactttttggtctccc 27418407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 20 - 115
Target Start/End: Complemental strand, 39301175 - 39301080
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggatttt 115  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||  |||||||||| || |||||||||| ||||  | |||||||||||||||    
T  39301175 agtggtattcaattgagattttgcacaacttaaaaattgtctattggtattcaaaattgtaaggattttaatagattgttgtgagtaatggatttt 39301080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 47914987 - 47914886
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    ||||||||||||| ||||||||||||||||||||||||||||  |   |||||||| ||||  |||||| || ||||  | |||||||||||||||||||    
T  47914987 agtggtattcaattgagattttgcataacttaaaaattgtctgctagtattcaaaactctacagatttttatggattgttgtgagtaatggattttgtga 47914888  T
Q  120 ga 121  Q
    ||    
T  47914887 ga 47914886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 126 - 185
Target Start/End: Complemental strand, 47914153 - 47914094
Alignment:
Q  126 ttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctccc 185  Q
    ||||| ||||||||| ||||||||||||||| |||||||||  |||||||| ||||||||    
T  47914153 ttagtgtaaaatgtacctactaacaatctcacacctagccttgagacttttttgtctccc 47914094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 127
Target Start/End: Original strand, 31494389 - 31494500
Alignment:
Q  16 atctagtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggatttt 115  Q
    |||| ||||||||||||| |||||||  | |||||||||||||||| |||  ||| |||| | ||| ||||||||| ||||| |  |   ||||||||||    
T  31494389 atctggtggtattcaatcaagattttttacaacttaaaaattgtctcttggtattaaaaaatgtattgattttaatggattacttggtagaatggatttt 31494488  T
Q  116 gtgagacttttt 127  Q
    |||| |||||||    
T  31494489 gtgaaacttttt 31494500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 92; Significance: 3e-44; HSPs: 1)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 20 - 183
Target Start/End: Complemental strand, 34744 - 34581
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    ||||||||||||| ||||||||||||||||||||||||||||  ||| |||||||| |||| |||||||||| ||||  | |||||||||||||||||||    
T  34744 agtggtattcaattgagattttgcataacttaaaaattgtctgctgatattcaaaactctacggattttaatggattgttgtgagtaatggattttgtga 34645  T
Q  120 gactttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctc 183  Q
    || | |||||| ||||||||||||||||||||||||| ||||| |||  |||||||||| ||||    
T  34644 gattgtttagtgtaaaatgtatctactaacaatctcacacctaaccttgagacttttctatctc 34581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 88; Significance: 6e-42; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 20 - 183
Target Start/End: Complemental strand, 81712 - 81549
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    ||||||||||||| ||||||||||||||||||||||||||||  ||  |||||||| |||| |||||||||| ||||  | |||||||||||||||||||    
T  81712 agtggtattcaattgagattttgcataacttaaaaattgtctcctggtattcaaaactctacggattttaatggattgttgtgagtaatggattttgtga 81613  T
Q  120 gactttttagtataaaatgtatctactaacaatctcatacctagcctcaagacttttctgtctc 183  Q
    || | |||||| ||||||||||||||||||||||||| ||||| |||  |||||||||| ||||    
T  81612 gattgtttagtgtaaaatgtatctactaacaatctcacacctaaccttgagacttttctatctc 81549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 20 - 162
Target Start/End: Complemental strand, 21343 - 21201
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatggattttaatcgattaatatgagtaatggattttgtga 119  Q
    ||||||||||||| |||||||||||||||||||||||||||||| |  |||||||| |||| |||||||||| ||||  | ||||||||||||||| |||    
T  21343 agtggtattcaattgagattttgcataacttaaaaattgtctatcggtattcaaaactctacggattttaatggattgttgtgagtaatggattttatga 21244  T
Q  120 gactttttagtataaaatgtatctactaacaatctcataccta 162  Q
    || | |||||| ||||||||| ||||||||||||||| |||||    
T  21243 gattgtttagtgtaaaatgtacctactaacaatctcacaccta 21201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 16472 - 16410
Alignment:
Q  20 agtggtattcaatcgagattttgcataacttaaaaattgtctattgaaattcaaaattctatg 82  Q
    ||||||||||||| |||||||||||||||||||||||||||||||   |||||||||||||||    
T  16472 agtggtattcaattgagattttgcataacttaaaaattgtctattagtattcaaaattctatg 16410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 101 - 162
Target Start/End: Complemental strand, 16409 - 16348
Alignment:
Q  101 tgagtaatggattttgtgagactttttagtataaaatgtatctactaacaatctcataccta 162  Q
    ||||||||||||||||||||| | |||||| |||| |||| ||||||||||||||| |||||    
T  16409 tgagtaatggattttgtgagattgtttagtgtaaagtgtacctactaacaatctcacaccta 16348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University