View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2555_low_10 (Length: 308)

Name: NF2555_low_10
Description: NF2555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2555_low_10
NF2555_low_10
[»] chr8 (12 HSPs)
chr8 (194-300)||(6437940-6438047)
chr8 (18-76)||(6437773-6437831)
chr8 (181-263)||(42412361-42412443)
chr8 (183-263)||(26677122-26677203)
chr8 (181-263)||(28802814-28802896)
chr8 (181-263)||(5392096-5392178)
chr8 (183-259)||(15559112-15559188)
chr8 (185-249)||(31132781-31132845)
chr8 (181-263)||(44790400-44790482)
chr8 (183-252)||(3384583-3384652)
chr8 (181-250)||(42558572-42558641)
chr8 (183-263)||(29730874-29730954)
[»] chr1 (17 HSPs)
chr1 (193-263)||(40019818-40019888)
chr1 (181-263)||(28839386-28839468)
chr1 (181-252)||(45889238-45889309)
chr1 (181-251)||(27831893-27831963)
chr1 (185-263)||(8327768-8327846)
chr1 (181-263)||(27391394-27391476)
chr1 (181-255)||(30749978-30750052)
chr1 (181-255)||(30771429-30771503)
chr1 (181-263)||(32348265-32348347)
chr1 (181-263)||(49494142-49494224)
chr1 (181-263)||(51749162-51749244)
chr1 (181-263)||(5442387-5442469)
chr1 (183-257)||(17724699-17724773)
chr1 (182-263)||(36467174-36467255)
chr1 (183-252)||(47479954-47480023)
chr1 (182-263)||(50267417-50267498)
chr1 (183-259)||(34813966-34814042)
[»] chr5 (11 HSPs)
chr5 (181-252)||(8369686-8369757)
chr5 (181-263)||(42575617-42575699)
chr5 (184-263)||(41594826-41594904)
chr5 (181-263)||(17242933-17243015)
chr5 (181-263)||(35334505-35334587)
chr5 (181-263)||(35646068-35646150)
chr5 (185-252)||(858386-858453)
chr5 (183-251)||(7311171-7311239)
chr5 (183-259)||(10650068-10650144)
chr5 (182-262)||(25814412-25814492)
chr5 (211-263)||(39008209-39008261)
[»] chr3 (8 HSPs)
chr3 (182-263)||(26134681-26134762)
chr3 (181-257)||(5245459-5245535)
chr3 (182-252)||(1772095-1772165)
chr3 (182-263)||(54122202-54122283)
chr3 (185-263)||(11251105-11251183)
chr3 (182-263)||(9017849-9017930)
chr3 (183-252)||(14756103-14756172)
chr3 (182-252)||(46785968-46786040)
[»] scaffold0321 (1 HSPs)
scaffold0321 (181-263)||(9530-9612)
[»] chr7 (7 HSPs)
chr7 (181-263)||(2846654-2846736)
chr7 (181-263)||(11616609-11616691)
chr7 (185-263)||(33584614-33584692)
chr7 (181-263)||(7425855-7425938)
chr7 (181-251)||(29257594-29257664)
chr7 (181-263)||(33774022-33774103)
chr7 (211-263)||(30463093-30463145)
[»] chr4 (13 HSPs)
chr4 (182-263)||(21240941-21241023)
chr4 (181-263)||(26185229-26185311)
chr4 (181-263)||(49306634-49306716)
chr4 (185-261)||(40020928-40021004)
chr4 (183-263)||(49448890-49448970)
chr4 (181-263)||(42024179-42024261)
chr4 (181-263)||(22872364-22872448)
chr4 (181-263)||(4360386-4360468)
chr4 (181-251)||(33047539-33047609)
chr4 (181-251)||(41710134-41710204)
chr4 (181-263)||(54729462-54729544)
chr4 (222-263)||(283455-283496)
chr4 (186-263)||(8295081-8295158)
[»] scaffold0006 (1 HSPs)
scaffold0006 (181-263)||(229870-229951)
[»] chr6 (2 HSPs)
chr6 (181-263)||(31265826-31265908)
chr6 (214-257)||(33109453-33109496)
[»] chr2 (11 HSPs)
chr2 (181-263)||(28108353-28108435)
chr2 (183-263)||(8550620-8550700)
chr2 (183-263)||(43950426-43950506)
chr2 (181-263)||(44534461-44534543)
chr2 (182-263)||(24775786-24775867)
chr2 (183-252)||(39159668-39159737)
chr2 (183-252)||(39209457-39209526)
chr2 (222-263)||(45464193-45464234)
chr2 (183-251)||(2756723-2756791)
chr2 (183-263)||(18181191-18181271)
chr2 (211-263)||(43077704-43077756)


Alignment Details
Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 194 - 300
Target Start/End: Original strand, 6437940 - 6438047
Alignment:
Q  194 atgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttataga-nnnnnnnaatatacgtaaaatgaacaa 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |        ||||||||||||||||||||    
T  6437940 atgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctgtctcattcacttatacattttttttaatatacgtaaaatgaacaa 6438039  T
Q  293 ataactca 300  Q
    ||||||||    
T  6438040 ataactca 6438047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 6437773 - 6437831
Alignment:
Q  18 aacttagtaccaaaaaccgaacgtgacagatttggtactctcaaataagtatgagatcg 76  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6437773 aacttagtaccaaaaaccgaacgtgacagatttggtactctcaaataagtatgagatcg 6437831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 181 - 263
Target Start/End: Complemental strand, 42412443 - 42412361
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||||||| ||||||||||| ||||  |||||||| | ||||||||| ||||||| ||||||||||||||||||||||||    
T  42412443 ccactttgcatttatgataatggagaatgcaccaatatatgacaagagcacttaaaactatttttctctctcattcacttata 42412361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 183 - 263
Target Start/End: Original strand, 26677122 - 26677203
Alignment:
Q  183 actttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaac-aatttttctctctcattcacttata 263  Q
    ||||||||| ||||||||||||||||  |||||||||||||||   || ||||||| |||||||||||||| ||||||||||    
T  26677122 actttgcatttatgataatggtgaatgcaccaatattttacaatgacacttaaaacaaatttttctctctctttcacttata 26677203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 181 - 263
Target Start/End: Original strand, 28802814 - 28802896
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||||||| ||||||| ||| ||||| | ||||| || ||||||||| ||||||| ||||||||||||| |||| |||||    
T  28802814 ccactttgcatttatgatagtggagaatagatcaatacttaacaagagcacttaaaaccatttttctctctctttcatttata 28802896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 263
Target Start/End: Original strand, 5392096 - 5392178
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||||||| ||||||| ||| ||||  ||||||| || |||| |||| ||||||| ||||||||||||| |||| |||||    
T  5392096 ccactttgcatttatgatagtggagaatgcaccaatacttgacaaaagcacttaaaaccatttttctctctccttcatttata 5392178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 259
Target Start/End: Complemental strand, 15559188 - 15559112
Alignment:
Q  183 actttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcact 259  Q
    ||||||||| |||||||||||| |||| ||||||| || |||||| || ||||||  |||||| |||||| ||||||    
T  15559188 actttgcatttatgataatggtaaatacaccaatacttgacaagaacacttaaaatcatttttgtctctccttcact 15559112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 249
Target Start/End: Original strand, 31132781 - 31132845
Alignment:
Q  185 tttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctct 249  Q
    ||||||| ||||||| ||| ||||||||||||| || ||||||||| ||||||  ||||||||||    
T  31132781 tttgcatttatgatactggagaatataccaatacttaacaagagcacttaaaatcatttttctct 31132845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 263
Target Start/End: Complemental strand, 44790482 - 44790400
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||| ||| ||||||| ||| ||||  ||||||| || ||||| ||| ||||||| ||||||||||||| |||| |||||    
T  44790482 ccactttacatttatgatagtggagaatgcaccaatacttaacaagtgcacttaaaactatttttctctctccttcatttata 44790400  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 252
Target Start/End: Original strand, 3384583 - 3384652
Alignment:
Q  183 actttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctc 252  Q
    ||||||||| ||||||| ||  |||||||||||||  | ||||||| |||||| || |||||||||||||    
T  3384583 actttgcatttatgatagtgaagaatataccaatacataacaagagtatttaataccatttttctctctc 3384652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 250
Target Start/End: Complemental strand, 42558641 - 42558572
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctc 250  Q
    ||||||||||| ||||||| ||| ||||| ||||||| || |||||| || ||||||| |||| ||||||    
T  42558641 ccactttgcatttatgatagtggagaataaaccaatacttaacaagaacaattaaaaccatttatctctc 42558572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 263
Target Start/End: Complemental strand, 29730954 - 29730874
Alignment:
Q  183 actttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||||| ||||||| ||| ||||  ||||||| || |||||| || ||||||| | ||||||||||| |||| |||||    
T  29730954 actttgcatttatgatagtggagaatgcaccaatacttaacaagaacacttaaaaccacttttctctctccttcatttata 29730874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 193 - 263
Target Start/End: Original strand, 40019818 - 40019888
Alignment:
Q  193 tatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||||||||||||| || |||| || ||||||||| ||||||||||||||||||||||||||||||||    
T  40019818 tatgataatggtgaatacacaaatacttgacaagagcacttaaaacaatttttctctctcattcacttata 40019888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 181 - 263
Target Start/End: Original strand, 28839386 - 28839468
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||||||| ||||||| ||| ||||| ||||||| || ||||||||||||||||| ||||||||||||| |||| |||||    
T  28839386 ccactttgcatttatgatagtggagaatagaccaatacttaacaagagcatttaaaactatttttctctctccttcatttata 28839468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 181 - 252
Target Start/End: Complemental strand, 45889309 - 45889238
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctc 252  Q
    ||||||||||| ||||||||||| ||||| ||||||| || ||||||||| ||||||| |||||||||||||    
T  45889309 ccactttgcatttatgataatggagaatagaccaatagttaacaagagcacttaaaaccatttttctctctc 45889238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 27831893 - 27831963
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctct 251  Q
    ||||||||||| ||||||||||||||||  ||||||| || ||||| ||| ||||||| ||||||||||||    
T  27831893 ccactttgcatttatgataatggtgaatgcaccaatacttgacaagggcacttaaaactatttttctctct 27831963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 263
Target Start/End: Original strand, 8327768 - 8327846
Alignment:
Q  185 tttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||| |||||||  || ||||| ||||||| || ||||||||| ||||||  |||||||||||||||||| |||||    
T  8327768 tttgcatttatgataggggagaatagaccaatacttaacaagagcacttaaaattatttttctctctcattcatttata 8327846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 263
Target Start/End: Original strand, 27391394 - 27391476
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||||||| ||||||||| || |||  ||||||| || | ||||||| ||||||  ||||||||||||| ||||||||||    
T  27391394 ccactttgcatttatgataatagtaaatgaaccaatacttaataagagcacttaaaatcatttttctctctccttcacttata 27391476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 255
Target Start/End: Original strand, 30749978 - 30750052
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcatt 255  Q
    ||||||||||| ||||||| | | ||||| | |||||||| |||| |||| ||||||| ||||||||||||||||    
T  30749978 ccactttgcatttatgatagtagagaatacatcaatatttaacaaaagcacttaaaactatttttctctctcatt 30750052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 255
Target Start/End: Original strand, 30771429 - 30771503
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcatt 255  Q
    ||||||||||| ||||||| | | ||||| | |||||||| |||| |||| ||||||| ||||||||||||||||    
T  30771429 ccactttgcatttatgatagtagagaatacatcaatatttaacaaaagcacttaaaactatttttctctctcatt 30771503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 263
Target Start/End: Original strand, 32348265 - 32348347
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||||||| | ||||| |||  |||| ||||||| || ||||||||| ||||||| ||||||||||||| |||| |||||    
T  32348265 ccactttgcatttgtgatagtggaaaatagaccaatacttaacaagagcacttaaaaccatttttctctctccttcatttata 32348347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 263
Target Start/End: Complemental strand, 49494224 - 49494142
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||| ||| ||||||| ||| ||||  |||||||||| ||||| ||| ||||||| ||||||||||||| |||| |||||    
T  49494224 ccactttacatttatgatagtggagaattgaccaatatttaacaagtgcacttaaaactatttttctctctctttcatttata 49494142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 263
Target Start/End: Complemental strand, 51749244 - 51749162
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||||||| ||||||||||| ||||| ||||||| || |||||| || ||||||  | ||||||||||| |||| |||||    
T  51749244 ccactttgcatttatgataatggagaataaaccaatacttaacaagaacacttaaaatcagttttctctctccttcatttata 51749162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 263
Target Start/End: Original strand, 5442387 - 5442469
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||||||| ||||||| ||| ||||  || |||| || ||||||  | ||||||| |||||||||||||||||| |||||    
T  5442387 ccactttgcatttatgatagtggagaatgcactaatacttaacaagataacttaaaaccatttttctctctcattcatttata 5442469  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 257
Target Start/End: Complemental strand, 17724773 - 17724699
Alignment:
Q  183 actttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattca 257  Q
    ||||||||| |||| || ||| ||||  | ||||| || ||||||||| ||||||||||||||||||||| ||||    
T  17724773 actttgcatttatggtagtggagaatgcatcaataattaacaagagcacttaaaacaatttttctctctccttca 17724699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 263
Target Start/End: Complemental strand, 36467255 - 36467174
Alignment:
Q  182 cactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    |||||| ||| ||| ||| ||| ||||  ||||||| || ||||| ||| ||||||| |||||||||||||||||| |||||    
T  36467255 cactttacatttatcatagtggagaatccaccaatacttaacaagtgcacttaaaactatttttctctctcattcatttata 36467174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 252
Target Start/End: Complemental strand, 47480023 - 47479954
Alignment:
Q  183 actttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctc 252  Q
    ||||||||| |||||||||||| |||| |  |||| || |||| || ||||||||| |||||||||||||    
T  47480023 actttgcatttatgataatggtaaatacattaatacttgacaaaagtatttaaaaccatttttctctctc 47479954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 263
Target Start/End: Complemental strand, 50267498 - 50267417
Alignment:
Q  182 cactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    |||||| ||| ||||||||||| ||||  ||||||| || ||||| ||| ||||||| ||||||||||| | |||| |||||    
T  50267498 cactttacatttatgataatggagaatgcaccaatacttaacaagtgcacttaaaactatttttctctcactttcatttata 50267417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 259
Target Start/End: Original strand, 34813966 - 34814042
Alignment:
Q  183 actttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcact 259  Q
    ||||||||| |||||||||| | |||  || |||| || |||||| || ||||||| ||||||||||||| ||||||    
T  34813966 actttgcatttatgataatgataaatgcactaatacttaacaagaacacttaaaactatttttctctctccttcact 34814042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 181 - 252
Target Start/End: Complemental strand, 8369757 - 8369686
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctc 252  Q
    ||||||||||| ||||||| ||| ||||  ||||||| || |||||||||||||||||||||||||||||||    
T  8369757 ccactttgcatttatgatagtggagaatgcaccaatacttaacaagagcatttaaaacaatttttctctctc 8369686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 263
Target Start/End: Complemental strand, 42575699 - 42575617
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||||||| ||||||| ||| ||||| ||||||| ||  |||||||| ||||||| |||||||||||||||||| |||||    
T  42575699 ccactttgcatttatgatagtggagaatacaccaatacttaccaagagcacttaaaaccatttttctctctcattcatttata 42575617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 263
Target Start/End: Complemental strand, 41594904 - 41594826
Alignment:
Q  184 ctttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    |||||||| ||||||||||||||||  ||||||| || |||| | |||||||||  ||||||||||||||||||||||||    
T  41594904 ctttgcatttatgataatggtgaatg-accaatacttgacaaaaacatttaaaattatttttctctctcattcacttata 41594826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 263
Target Start/End: Complemental strand, 17243015 - 17242933
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||||||| ||||||| | | ||||| ||||||| || ||||||| | | ||||| |||||||||||||||||| |||||    
T  17243015 ccactttgcatttatgatagtagagaatagaccaatacttaacaagagtactaaaaaccatttttctctctcattcatttata 17242933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 263
Target Start/End: Complemental strand, 35334587 - 35334505
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||||||| ||||||| ||| ||||| || |||| || | ||||||| ||||||| ||||||||||||| |||| |||||    
T  35334587 ccactttgcatttatgatagtggagaatagacaaatacttaataagagcacttaaaactatttttctctctccttcatttata 35334505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 263
Target Start/End: Complemental strand, 35646150 - 35646068
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||||||| ||||||| ||| ||||  ||||||| || |||||| || ||||||  |||||||||||||||||| |||||    
T  35646150 ccactttgcatttatgatagtggagaatgcaccaatacttaacaagatcacttaaaatcatttttctctctcattcatttata 35646068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 185 - 252
Target Start/End: Original strand, 858386 - 858453
Alignment:
Q  185 tttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctc 252  Q
    ||||||| ||||||||||| |||| ||||||||||| ||||||  | ||||||| |||||| ||||||    
T  858386 tttgcatttatgataatggagaatgtaccaatatttaacaagataacttaaaaccatttttttctctc 858453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 7311239 - 7311171
Alignment:
Q  183 actttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctct 251  Q
    ||||||||| |||||||||||| |||  || |||| || | ||||||| ||||||| ||||||||||||    
T  7311239 actttgcatttatgataatggtaaatgcacaaatacttgataagagcacttaaaaccatttttctctct 7311171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 259
Target Start/End: Original strand, 10650068 - 10650144
Alignment:
Q  183 actttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcact 259  Q
    ||||||||| |||| ||||||| ||| |||||||||||  |||||||| ||||| | |||| | ||| |||||||||    
T  10650068 actttgcatttatgttaatggtaaatgtaccaatatttgtcaagagcacttaaagccatttatttctttcattcact 10650144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 262
Target Start/End: Original strand, 25814412 - 25814492
Alignment:
Q  182 cactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttat 262  Q
    |||||| ||| ||||||| |||  ||| |||||||| || ||||| ||| ||||||| ||||||||||||| |||| ||||    
T  25814412 cactttacatttatgatagtggataatgtaccaatacttaacaagtgcacttaaaactatttttctctctccttcatttat 25814492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 263
Target Start/End: Original strand, 39008209 - 39008261
Alignment:
Q  211 accaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||| || ||||||||| ||||||| ||||||||||||| |||| |||||    
T  39008209 accaatacttaacaagagcacttaaaaccatttttctctctccttcatttata 39008261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 182 - 263
Target Start/End: Complemental strand, 26134762 - 26134681
Alignment:
Q  182 cactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    |||||||||| ||||||| ||| ||||| || |||| || ||||||||| ||||||||||||||||||||| |||| |||||    
T  26134762 cactttgcatttatgatagtggagaatagactaatacttaacaagagcacttaaaacaatttttctctctccttcatttata 26134681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 181 - 257
Target Start/End: Original strand, 5245459 - 5245535
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattca 257  Q
    |||||||| || ||||||| ||| ||||| ||||||| || ||||||||| ||||||| ||||||||||||| ||||    
T  5245459 ccactttgtatttatgatattggagaatacaccaatacttaacaagagcacttaaaactatttttctctctccttca 5245535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 252
Target Start/End: Complemental strand, 1772165 - 1772095
Alignment:
Q  182 cactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctc 252  Q
    |||||||| | ||||||| ||| ||||||||||||| || |||||| || ||||||| |||||||||||||    
T  1772165 cactttgcttttatgatagtggagaatataccaatacttaacaagaacacttaaaaccatttttctctctc 1772095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 263
Target Start/End: Complemental strand, 54122283 - 54122202
Alignment:
Q  182 cactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    |||||||||| ||||||| ||| ||||  ||||||| || |||| | |||||||||| ||||||||||||| |||| |||||    
T  54122283 cactttgcatttatgatagtggagaatgcaccaatacttaacaaaaacatttaaaactatttttctctctccttcatttata 54122202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 263
Target Start/End: Complemental strand, 11251183 - 11251105
Alignment:
Q  185 tttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||| ||||||| ||| ||||  ||||||| || ||||||||| ||||||  |||||| ||||||||||| |||||    
T  11251183 tttgcatttatgatagtggagaatgcaccaatacttaacaagagcacttaaaatcatttttttctctcattcatttata 11251105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 263
Target Start/End: Original strand, 9017849 - 9017930
Alignment:
Q  182 cactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    |||||||||| ||| ||| ||| ||||  ||||||| || |||| |||| ||||||| ||||||||||||| |||| |||||    
T  9017849 cactttgcatttataatagtggagaatgcaccaatacttaacaaaagcacttaaaactatttttctctctctttcatttata 9017930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 252
Target Start/End: Complemental strand, 14756172 - 14756103
Alignment:
Q  183 actttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctc 252  Q
    ||||||||| ||||||| ||| |||| ||||| || || ||||||||| ||||||  |||||||||||||    
T  14756172 actttgcatttatgatagtggagaatgtaccagtacttaacaagagcacttaaaattatttttctctctc 14756103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 252
Target Start/End: Complemental strand, 46786040 - 46785968
Alignment:
Q  182 cactttgcatgtatgataatggtgaatataccaat--attttacaagagcatttaaaacaatttttctctctc 252  Q
    |||||||||| ||||||| ||| ||||||||||||  | || |||||| |||||||||| |||||| ||||||    
T  46786040 cactttgcatttatgatagtggagaatataccaatacacttaacaagatcatttaaaactatttttttctctc 46785968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 181 - 263
Target Start/End: Complemental strand, 9612 - 9530
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||||||| ||||||||||| ||||| |  |||| || ||||||||| ||||||| ||||||||||||| |||| |||||    
T  9612 ccactttgcatttatgataatggagaatacattaatacttaacaagagcacttaaaaccatttttctctctccttcatttata 9530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 181 - 263
Target Start/End: Complemental strand, 2846736 - 2846654
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    |||||||| || ||||||| ||| ||||| ||||||| || ||||||||| ||||||| ||||||||||||| |||| |||||    
T  2846736 ccactttgaatttatgatagtggagaatagaccaatacttaacaagagcacttaaaactatttttctctctcgttcatttata 2846654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 181 - 263
Target Start/End: Original strand, 11616609 - 11616691
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||||||| ||||||| ||| ||||  ||||||| || ||||||||| ||||||| ||||||||||||| |||| |||||    
T  11616609 ccactttgcatatatgatagtggagaatgcaccaatacttaacaagagcacttaaaaccatttttctctctccttcatttata 11616691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 263
Target Start/End: Original strand, 33584614 - 33584692
Alignment:
Q  185 tttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||| ||||||| ||| ||||| ||||||| || |||| |||| ||||||| ||||||||||||| |||| |||||    
T  33584614 tttgcatttatgatactggagaatacaccaatacttaacaatagcacttaaaaccatttttctctctccttcatttata 33584692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 263
Target Start/End: Complemental strand, 7425938 - 7425855
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatatttta-caagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||||||| ||||||| ||| ||||  ||||||| || | ||||| || ||||||| |||||||||||||||||| |||||    
T  7425938 ccactttgcatttatgatagtggagaatgcaccaatacttaaacaagaacacttaaaaccatttttctctctcattcatttata 7425855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 29257594 - 29257664
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctct 251  Q
    ||||||||||| ||||||| |||  |||| ||||||| || ||||||||| ||||||| |||||| |||||    
T  29257594 ccactttgcatttatgatagtggaaaatagaccaataattaacaagagcacttaaaaccatttttttctct 29257664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 263
Target Start/End: Complemental strand, 33774103 - 33774022
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||||||| ||||||| ||| ||||| | ||||| || |||||| || | ||||| ||||||||||||| ||||||||||    
T  33774103 ccactttgcatctatgatagtggagaatacatcaatacttaacaaga-cactcaaaactatttttctctctctttcacttata 33774022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 263
Target Start/End: Original strand, 30463093 - 30463145
Alignment:
Q  211 accaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||| || ||||| ||| ||||||| |||||||||||||||||| |||||    
T  30463093 accaatacttaacaagtgcacttaaaactatttttctctctcattcatttata 30463145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 182 - 263
Target Start/End: Original strand, 21240941 - 21241023
Alignment:
Q  182 cactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaac-aatttttctctctcattcacttata 263  Q
    |||||||||| ||||||||||||||||  ||||||| || ||||||||| ||||||| | |||||||||||| ||||| ||||    
T  21240941 cactttgcatttatgataatggtgaattgaccaatacttgacaagagcacttaaaactattttttctctctccttcacctata 21241023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 181 - 263
Target Start/End: Original strand, 26185229 - 26185311
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    |||| |||||| ||||||| ||| ||||| ||||||| || ||||||| ||||||||| ||||||||||||| |||| |||||    
T  26185229 ccacgttgcatttatgatagtggagaatagaccaatacttaacaagagtatttaaaaccatttttctctctccttcatttata 26185311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 181 - 263
Target Start/End: Original strand, 49306634 - 49306716
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||||||| |||||||  || ||||| ||||||| || ||||||||| ||||||| ||||||||||||| |||| |||||    
T  49306634 ccactttgcatttatgataggggagaatagaccaatacttaacaagagcacttaaaaccatttttctctctctttcatttata 49306716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 185 - 261
Target Start/End: Complemental strand, 40021004 - 40020928
Alignment:
Q  185 tttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcactta 261  Q
    ||||||| |||||||||||| |||  ||||||| || |||| | |||| ||||| ||||||||||||||||||||||    
T  40021004 tttgcatctatgataatggtaaatgcaccaatacttgacaaaaacattcaaaaccatttttctctctcattcactta 40020928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 183 - 263
Target Start/End: Original strand, 49448890 - 49448970
Alignment:
Q  183 actttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||||| ||||||||| | ||||  || |||| || ||||||||| ||||||| ||||||||||||| ||||||||||    
T  49448890 actttgcatttatgataatagagaatgcacaaatacttgacaagagcacttaaaaccatttttctctctccttcacttata 49448970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 263
Target Start/End: Complemental strand, 42024261 - 42024179
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||||||| ||| ||| ||| ||||| ||||||| || ||||||| | ||||||| ||||||||||||| |||| |||||    
T  42024261 ccactttgcatttataatagtggagaatagaccaatacttaacaagagtagttaaaaccatttttctctctccttcatttata 42024179  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 263
Target Start/End: Complemental strand, 22872448 - 22872364
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaa--gagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||||||| ||||||||||| ||||  ||||||| || ||||  ||||| ||||||| ||||||||||||  ||||||||||    
T  22872448 ccactttgcatttatgataatggagaatgcaccaatacttgacaaacgagcacttaaaaccatttttctctcttcttcacttata 22872364  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 263
Target Start/End: Complemental strand, 4360468 - 4360386
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||||||| |||| || ||| ||||  ||||||| || |||| |||| ||||||| |||||||||| ||||||| |||||    
T  4360468 ccactttgcatttatgctagtggagaatgcaccaatacttaacaaaagcacttaaaaccatttttctctttcattcatttata 4360386  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 33047539 - 33047609
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctct 251  Q
    |||||||| || ||||||| ||| |||| |||||||| || |||| |||| ||||||| ||||||||||||    
T  33047539 ccactttgtatttatgatagtggagaatctaccaatacttaacaaaagcacttaaaaccatttttctctct 33047609  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 41710204 - 41710134
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctct 251  Q
    ||||||||||| ||||||| |||  |||| ||||||| || ||||||||| ||||||| |||||| |||||    
T  41710204 ccactttgcatttatgatagtggaaaatagaccaataattaacaagagcacttaaaaccatttttttctct 41710134  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 263
Target Start/End: Complemental strand, 54729544 - 54729462
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||||||| ||||||| ||| ||||| || |||| || |||| | || ||||||| ||||||||||||| |||| |||||    
T  54729544 ccactttgcatttatgatagtggagaatacactaatacttaacaaaaacacttaaaactatttttctctctctttcatttata 54729462  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 263
Target Start/End: Complemental strand, 283496 - 283455
Alignment:
Q  222 acaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||||| ||||||||||||||||||||| |||| |||||    
T  283496 acaagagcacttaaaacaatttttctctctccttcatttata 283455  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 263
Target Start/End: Original strand, 8295081 - 8295158
Alignment:
Q  186 ttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    |||||| ||||||| ||| ||||  ||||||| ||  |||||| | ||||||||||||||||||||| |||| |||||    
T  8295081 ttgcatttatgatagtggagaatgcaccaatacttatcaagaggacttaaaacaatttttctctctctttcatttata 8295158  T

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Target: scaffold0006 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 263
Target Start/End: Original strand, 229870 - 229951
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||||||| ||||||||||| ||||  ||||||| || ||||||||| ||||||| |||||||| |||| |||| |||||    
T  229870 ccactttgcatttatgataatggagaatgcaccaatacttaacaagagcacttaaaac-atttttctatctccttcatttata 229951  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 263
Target Start/End: Original strand, 31265826 - 31265908
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||| ||| ||||||| ||| ||||  ||||||| || ||||||||| ||||||| ||||||||||||| |||| |||||    
T  31265826 ccactttacatttatgatagtggagaatgcaccaatacttaacaagagcacttaaaactatttttctctctccttcatttata 31265908  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 257
Target Start/End: Original strand, 33109453 - 33109496
Alignment:
Q  214 aatattttacaagagcatttaaaacaatttttctctctcattca 257  Q
    ||||||| ||||| ||||||||||| ||||||||||||||||||    
T  33109453 aatatttaacaagtgcatttaaaactatttttctctctcattca 33109496  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 263
Target Start/End: Complemental strand, 28108435 - 28108353
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||| ||||||||||| ||| ||||  ||||||| || ||||| ||| ||||||| ||||||||||||| |||| |||||    
T  28108435 ccactttacatgtatgatagtggagaatgcaccaatacttaacaagtgcacttaaaactatttttctctctccttcatttata 28108353  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 263
Target Start/End: Complemental strand, 8550700 - 8550620
Alignment:
Q  183 actttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||||| ||||||||||| ||||  || |||| || |||||| || ||||||| | ||||||||||| ||||||||||    
T  8550700 actttgcatttatgataatggagaatgcacaaatacttgacaagaacacttaaaaccacttttctctctctttcacttata 8550620  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 263
Target Start/End: Complemental strand, 43950506 - 43950426
Alignment:
Q  183 actttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||||| |||| ||||||  |||| | ||||| || |||| | |||||||||| ||||||||||||| ||||||||||    
T  43950506 actttgcatttatgttaatggaaaatacatcaatacttaacaaaaacatttaaaactatttttctctctctttcacttata 43950426  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 263
Target Start/End: Complemental strand, 44534543 - 44534461
Alignment:
Q  181 ccactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||||||| ||||||| ||| |||| |||||||| || |||||| |||||||||  |||||| ||| || |||| |||||    
T  44534543 ccactttgcatttatgatagtggagaatgtaccaatacttaacaagaacatttaaaatcatttttttctgtccttcatttata 44534461  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 263
Target Start/End: Complemental strand, 24775867 - 24775786
Alignment:
Q  182 cactttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    |||||| ||| ||||||| ||| ||||| ||||||| || ||||| ||| ||||||  ||||||||||||| |||| |||||    
T  24775867 cactttacatttatgatagtggagaatacaccaatacttaacaagtgcacttaaaattatttttctctctccttcatttata 24775786  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 252
Target Start/End: Original strand, 39159668 - 39159737
Alignment:
Q  183 actttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctc 252  Q
    ||||||||| || ||||||||| ||| ||| || |||| ||||||||| ||||||  |||||||||||||    
T  39159668 actttgcatttaagataatggtaaatgtactaacatttgacaagagcacttaaaatcatttttctctctc 39159737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 252
Target Start/End: Complemental strand, 39209526 - 39209457
Alignment:
Q  183 actttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctc 252  Q
    ||||||||| || ||||||||| ||| ||| || |||| ||||||||| ||||||  |||||||||||||    
T  39209526 actttgcatttaagataatggtaaatgtactaacatttgacaagagcacttaaaatcatttttctctctc 39209457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 263
Target Start/End: Complemental strand, 45464234 - 45464193
Alignment:
Q  222 acaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||||||||||||  |||||| |||||||||||||||||    
T  45464234 acaagagcatttaaaatcatttttttctctcattcacttata 45464193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 2756723 - 2756791
Alignment:
Q  183 actttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctct 251  Q
    ||||| ||| |||||||||||| |||  || |||| || ||||||||| |||||| |||||||||||||    
T  2756723 actttacatttatgataatggtaaatgcactaatacttgacaagagcacttaaaataatttttctctct 2756791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 263
Target Start/End: Complemental strand, 18181271 - 18181191
Alignment:
Q  183 actttgcatgtatgataatggtgaatataccaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||||| ||||||| ||| ||||  |||||||  | |||| |||| ||||||| |||||||||||||  |||||||||    
T  18181271 actttgcatttatgatagtggagaatgcaccaatacataacaaaagcacttaaaaccatttttctctctctctcacttata 18181191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 263
Target Start/End: Complemental strand, 43077756 - 43077704
Alignment:
Q  211 accaatattttacaagagcatttaaaacaatttttctctctcattcacttata 263  Q
    ||||||| || |||||  |||||||||| |||||||||||||||||| |||||    
T  43077756 accaatagttaacaagtacatttaaaactatttttctctctcattcatttata 43077704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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