View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2555_low_11 (Length: 284)
Name: NF2555_low_11
Description: NF2555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2555_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 50832163 - 50832432
Alignment:
| Q |
1 |
atggatatccctttccttataattaatttaattttagaaatggattccaatgcaaattaacataatcacaactgattagcagattgaagnnnnnnnn--a |
98 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
50832163 |
atggatatccctttccttataattaatttaattttagaaatggattccaatgcaaattaacataatcacaactgattagcagattgaagtttttttttta |
50832262 |
T |
|
| Q |
99 |
ggttcaaacatttaattcattgaagaaaagctggttcacagcttctaaaaagaggttacaacagtttcagttaccaaaagttcagtaggggcattcccta |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50832263 |
ggttcaaacatttaattcattgaagaaaagctggttcacagcttctaaaaagaggttacaacagtttcagttaccaaaagttcagtaggggcattcccta |
50832362 |
T |
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| Q |
199 |
tccaagctttaaatcctacagtcttagaaagaatggccatgtcacgtgcctctacattaaaacatctttt |
268 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50832363 |
tccaagctttaaatcctacagtcttagaaagaatggccatgtcacgtgcctctacattaaaacatctttt |
50832432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 50843690 - 50843421
Alignment:
| Q |
1 |
atggatatccctttccttataattaatttaattttagaaatggattccaatgcaaattaacataatcacaactgattagcagattgaagnnnnnnnn--a |
98 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
50843690 |
atggatatccctttccttataattaatttaattttagaaatggattccaatgcaaattaacataatcacaactgattagcagattgaagtttttttttta |
50843591 |
T |
|
| Q |
99 |
ggttcaaacatttaattcattgaagaaaagctggttcacagcttctaaaaagaggttacaacagtttcagttaccaaaagttcagtaggggcattcccta |
198 |
Q |
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| T |
50843590 |
ggttcaaacatttaattcattgaagaaaagctggttcacagcttctaaaaagaggttacaacagtttcagttaccaaaagttcagtaggggcattcccta |
50843491 |
T |
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| Q |
199 |
tccaagctttaaatcctacagtcttagaaagaatggccatgtcacgtgcctctacattaaaacatctttt |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50843490 |
tccaagctttaaatcctacagtcttagaaagaatggccatgtcacgtgcctctacattaaaacatctttt |
50843421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 33 - 269
Target Start/End: Original strand, 32791834 - 32792056
Alignment:
| Q |
33 |
tttagaaatggattccaatgcaaattaacataatcacaactgattagcagattgaagnnnnnnnn--aggttcaaacatttaattcattgaagaaaagct |
130 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
32791834 |
tttagaaatggattccaatgcaaattaacataatcacaactgattagcagattgaagatttttttttaggttcaaacatttaattcgttgaagaaaagct |
32791933 |
T |
|
| Q |
131 |
ggttcacagcttctaaaaagaggttacaacagtttcagttaccaaaagttcagtaggggcattccctatccaagctttaaatcctacagtcttagaaaga |
230 |
Q |
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| T |
32791934 |
ggttcacagcttctaaaaagaggttacaacagtt----------------cagtaggggcattccctatccaagctttaaatcctacagtcttagaaaga |
32792017 |
T |
|
| Q |
231 |
atggccatgtcacgtgcctctacattaaaacatcttttt |
269 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||| |
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| T |
32792018 |
atggccatgtcatgtgcctctacattaaaacatcttttt |
32792056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 24533962 - 24534232
Alignment:
| Q |
1 |
atggatatccctttccttataattaatttaattttagaaatggattccaatgcaaattaacataatcacaactgattagcagattgaagnnnnnnnn--a |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
24533962 |
atggatatccctttccttataattaatttaattttagaaatggattccaatgcaaattaacataatcacaactgattagcagattgaagtttttttttta |
24534061 |
T |
|
| Q |
99 |
ggttcaaacatttaattcattgaagaaaagctggttcacagcttctaaaaagaggttacaacagtttcagttaccaaaagttcagtaggggcattcccta |
198 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
24534062 |
ggttcaaacatttaattcgttgaagaaaagctggttcacagcttctaaaaagaggttacaacagtttcagttaccaacagttcagtaggggcattcccta |
24534161 |
T |
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| Q |
199 |
tccaagctttaaatcctacagtcttagaaagaatggccatgtcacgtgcctctacattaaaacatcttttt |
269 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
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| T |
24534162 |
tccaagctttaaatcctacagtcttagaaagaatagccatgtcatgtgcctctacattaaaacatcttttt |
24534232 |
T |
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