View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2555_low_15 (Length: 249)
Name: NF2555_low_15
Description: NF2555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2555_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 9 - 227
Target Start/End: Complemental strand, 35562791 - 35562566
Alignment:
| Q |
9 |
gagtagcataggtggtggtggttgtgaccaatggttgtcggaactgagactcatctctctcaagcagcagtggatgtagagagatacggtggtggagagg |
108 |
Q |
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| T |
35562791 |
gagtatcacaggtggtggtggttgtgaccaatggttgtcagaactgagactcatctctctcaagcagcagtggatgtagagagatacggtggtggagagg |
35562692 |
T |
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| Q |
109 |
acggtgatgagagtggtcttggtgggt-agagatgaatctgagaaggttgat------atggtggtgctataaacatagattagagacgatcttgtggtg |
201 |
Q |
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| T |
35562691 |
acggtgatgagagtggtcttggtgggtgagagatgaatctgagaaggttgatatggtgatggtggtgttgtaaacatagattagagacgatcttgtggtg |
35562592 |
T |
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| Q |
202 |
gtgacaggagaatagtggtggtggtg |
227 |
Q |
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|||| |||||||||| |||||||||| |
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| T |
35562591 |
gtgataggagaatagcggtggtggtg |
35562566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 161 - 227
Target Start/End: Complemental strand, 14054560 - 14054494
Alignment:
| Q |
161 |
tggtggtgctataaacatagattagagacgatcttgtggtggtgacaggagaatagtggtggtggtg |
227 |
Q |
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| T |
14054560 |
tggtggtgttgtaaacatagattagagacgatcttgtggtggtgataggagaatagcggtggtggtg |
14054494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 24 - 227
Target Start/End: Complemental strand, 45580697 - 45580488
Alignment:
| Q |
24 |
tggtggttgtgaccaatggttgtcggaactgagactcatctctctcaagcagcagtggatgtagagagatacggtggtggagaggacggtgatgagagtg |
123 |
Q |
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| T |
45580697 |
tggtggttgtgaccaatggttgtcggaactgagactcatctctctcaagcagcagtggatgtagagagatacggtggtggagaggacggtgatgagagtg |
45580598 |
T |
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| Q |
124 |
gtcttggtgggtagagatgaatctgagaaggttgatatggt------ggtgctataaacatagattagagacgatcttgtggtggtgacaggagaatagt |
217 |
Q |
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| T |
45580597 |
gtgttggtgggtagagatgaatctgagaaggttgatatggtggtggtggtgctgtagacatagattagagacgatcttgtggtggtgataggagaatagc |
45580498 |
T |
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| Q |
218 |
ggtggtggtg |
227 |
Q |
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|||||||||| |
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| T |
45580497 |
ggtggtggtg |
45580488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 9 - 216
Target Start/End: Original strand, 37022619 - 37022833
Alignment:
| Q |
9 |
gagtagcataggtggtggtggttgtgaccaatggttgtcggaactgagactcatctctctcaagcagcagtggatgtagagagatacggtggtggagagg |
108 |
Q |
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||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
37022619 |
gagtatcacaggtggtggtggttgtgaccaatggttgtcagaactgagactcatctctctcaagcagtagtggatgtagagagatacggtggtggagagg |
37022718 |
T |
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| Q |
109 |
acggtgatgagagtggtcttggtgggt-agagatgaatctgagaaggttgata------tggtggtgctataaacatagattagagacgatcttgtggtg |
201 |
Q |
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||||||||||||||||| ||||||||| |||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||| |
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| T |
37022719 |
acggtgatgagagtggttttggtgggtgagagatgaatctgagaaggttggtatggtggtggtggtgctgtaaacatagattagagacgatcttgtggtg |
37022818 |
T |
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| Q |
202 |
gtgacaggagaatag |
216 |
Q |
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|||| |||||||||| |
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| T |
37022819 |
gtgataggagaatag |
37022833 |
T |
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