View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2555_low_2 (Length: 517)
Name: NF2555_low_2
Description: NF2555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2555_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-150; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 13 - 354
Target Start/End: Original strand, 29907999 - 29908340
Alignment:
| Q |
13 |
caaaggcaaacaaacagcaatacaaaccttctcatcaacaaacaccatctcaatcgaattgatctgttatgattgaagaaaagcacgcacctcccacaaa |
112 |
Q |
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| T |
29907999 |
caaaggcaaacaaacagcaatacaaaccttctcatcaacaaacaccatctcaattgaattgatctgttatgattgaagaaaatcacgcacctcccacaaa |
29908098 |
T |
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| Q |
113 |
cgaacaacatgaagcttgaatccccaagactcctttccaggaacaacatcagacaccaaatcaaagctgcgatacctctgtgaccagacctaagaccctt |
212 |
Q |
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| T |
29908099 |
cgaacaacacgaagcttgaatctccaagactctcttccaggaagaacatcagacagcaaatcaaagctgcgatacctctgtgaccagacctaagaccctt |
29908198 |
T |
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| Q |
213 |
gttatcaaacctaacacctttcaacattgcagaagacattnnnnnnnntgatttaaaccatagcagatcggaaatcggaaaaagaaaagaatgagatgag |
312 |
Q |
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| T |
29908199 |
gttatcaaacctaacacctttcaacattgcagaagacattaaaaaaaaagatttaaaccagagcagattggaaatcggaaaaagaaaagaatgagatgag |
29908298 |
T |
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| Q |
313 |
ttgtcagaaacagaaagaaatccaggactatttatagaggat |
354 |
Q |
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| T |
29908299 |
ttgtgagaaacagaaagaaatccaggactatttatagaggat |
29908340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 376 - 499
Target Start/End: Original strand, 29908337 - 29908460
Alignment:
| Q |
376 |
ggatttgaaaaagagggggaaagataaattctcctttgatgtgaatggacatgtaattgaattagcttaaattaattggaggaattgaaggaattcaatc |
475 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29908337 |
ggatttgaaaaagagggggaaagataaattctcctttgatgtgaatggacatgtaattgaattagcttaaattaattggaggaattgaaggaattcaatc |
29908436 |
T |
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| Q |
476 |
aaaccccacgtgcatcttcaaatc |
499 |
Q |
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| T |
29908437 |
aaaccccacgtgcatcttcaaatc |
29908460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 37 - 182
Target Start/End: Original strand, 29908839 - 29908984
Alignment:
| Q |
37 |
aaccttctcatcaacaaacaccatctcaatcgaattgatctgttatgattgaagaaaagcacgcacctcccacaaacgaacaacatgaagcttgaatccc |
136 |
Q |
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||||||||||||||| ||||||||||||| |||||| | ||||| | |||||||| ||| | ||||||||| ||| || ||| ||| |||||| | |
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| T |
29908839 |
aaccttctcatcaaccaacaccatctcaaccgaattcacctgttcaggatgaagaaacgcaggagcctcccacagacgcaccacacgaacaatgaatctc |
29908938 |
T |
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| Q |
137 |
caagactcctttccaggaacaacatcagacaccaaatcaaagctgc |
182 |
Q |
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| T |
29908939 |
caagactcctttccaggagcagcatcagataacagatcaaaactgc |
29908984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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