View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2555_low_22 (Length: 228)
Name: NF2555_low_22
Description: NF2555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2555_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 8 - 212
Target Start/End: Complemental strand, 12288745 - 12288543
Alignment:
| Q |
8 |
agtagcaaaggcaccaacatcaccacatgtaattgttctttcaatatatttagtgcccatacaaagttatcacttatcagcgagctcatattgtaaatag |
107 |
Q |
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| T |
12288745 |
agtaacaatggcaccaacatcaccacatgtaattgttctttcaatatatttagtgcccatacaaagttatcacttatcagcgagctcatattgtaaatag |
12288646 |
T |
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| Q |
108 |
gcaaacaccaccgaaaatgtcattccaatcaaggtatcgccgacaacctcaagcaatggcaatcgattattgcaagtcttatacattttatctcttgaag |
207 |
Q |
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| T |
12288645 |
gcaaacaccaccgaaaatgtcattccaatcaaggtat--ccgacaaactcaagcaatggcaatcgattattgcaagtcttatacattttatctcttgaag |
12288548 |
T |
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| Q |
208 |
gtatt |
212 |
Q |
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||||| |
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| T |
12288547 |
gtatt |
12288543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 17 - 187
Target Start/End: Complemental strand, 12314826 - 12314662
Alignment:
| Q |
17 |
ggcaccaacatcaccacatgtaatt-gttctttcaatatatttagtgcccatacaaagttatcacttatcagcgagctcatattgtaaataggcaaacac |
115 |
Q |
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| T |
12314826 |
ggcaccaacatccgcacatgtactttgttctttcaacatatttagtgcccatacaaagttatcaa-------catgctcatattgtaaataggcaaacac |
12314734 |
T |
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| Q |
116 |
caccgaaaatgtcattccaatcaaggtatcgccgacaacctcaagcaatggcaatcgattattgcaagtctt |
187 |
Q |
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| T |
12314733 |
caccgaaaatgtcattccagttgaggtaacaccgacaacctcaagaaatggcaatcgattatcgcaagtctt |
12314662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 8702518 - 8702353
Alignment:
| Q |
19 |
caccaacatcaccacatgtaatt-gttctttcaatatatttagtgcccatacaaagttatcacttatcagcgagctcatattgtaaataggcaaacacca |
117 |
Q |
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| T |
8702518 |
caccaacatcaccacttgtaatttgttctttcaacatttttagtgcccaaacaaagttattac-------cacgctcagattgtaaataagcaaatgcca |
8702426 |
T |
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| Q |
118 |
ccgaaaatgtcattccaatcaaggtatcgccgacaacctcaagcaatggcaatcgattattgcaagtcttata |
190 |
Q |
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| T |
8702425 |
ccgaaaatgttattccggtcaaagtaacaccaacaatctctagcaatggcaaatgatacttgcaagtcttata |
8702353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 7151185 - 7151020
Alignment:
| Q |
19 |
caccaacatcaccacatgtaa-ttgttctttcaatatatttagtgcccatacaaagttatcacttatcagcgagctcatattgtaaataggcaaacacca |
117 |
Q |
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||||||||||||||||||||| |||||||||||| | |||||||||||| ||||||||| |||| || |||| | |||||||| |||||| | | |
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| T |
7151185 |
caccaacatcaccacatgtaatttgttctttcaacttttttagtgcccatgtaaagttatc-ctta-ca-----ctcagaatgtaaataagcaaacgcaa |
7151093 |
T |
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| Q |
118 |
ccgaaaatgtcattccaatcaaggtatcgccgacaacctcaagcaatggcaatcgattattgcaagtcttata |
190 |
Q |
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| T |
7151092 |
ccgaaaatgttgttccagtcgaagtaacactgacaatctcaagcaatggcaattgatacttgcaagtcttata |
7151020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 8107165 - 8107106
Alignment:
| Q |
19 |
caccaacatcaccacatgtaattg-ttctttcaatatatttagtgcccatacaaagttat |
77 |
Q |
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||||||||||||||| ||||||| ||||||||| || ||||||||||| |||||||||| |
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| T |
8107165 |
caccaacatcaccacttgtaatttattctttcaacatttttagtgcccaaacaaagttat |
8107106 |
T |
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