View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2555_low_4 (Length: 460)
Name: NF2555_low_4
Description: NF2555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2555_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 4 - 445
Target Start/End: Original strand, 12031146 - 12031591
Alignment:
| Q |
4 |
cgtaaagtatatcattgattatggatgcgatattctactcggccgctcgctactaaacaaaaactttcattttatcgaaattgtgaatctggacataaca |
103 |
Q |
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| T |
12031146 |
cgtaaagtatatcattgattatggatgcaatattctactcggccgctcgctactaaacaaaaactttcattttatcgaaattgtgaatctcgacataaca |
12031245 |
T |
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| Q |
104 |
aaatgttcatagacacatatccgcacggacaaaatttagacataa----ttttagattatacttctaaactcatgtcgaggacggagaaagagtcgaata |
199 |
Q |
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| T |
12031246 |
aaatgttcatagacacatatccgcacggacaagatttagacgtacgtatttttagattatacttctaaactcatgtcgaggacggagaaagagtcgaaga |
12031345 |
T |
|
| Q |
200 |
gtgtacctaagtagaccttgacagcttgcatataagaataatttctcttgccattaactggatctggatacctatagcaatcagccacaagactgtaagt |
299 |
Q |
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| T |
12031346 |
gtgtacctaagtagaccttgacagcttgcatataagaataatttctcttgccattaactggatctggatacctatagcaatcagccacaagactgtaagt |
12031445 |
T |
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| Q |
300 |
gaaaacagaaatacatgaaaagatcaatatacttgcaataccagctatccatcctaatttggcaatggcatatgctagggctaacgctccttcaccaatt |
399 |
Q |
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| T |
12031446 |
gaaaacagaaatacatgaaaagatcaatatacttgcaataccagctatccatcctaattgtgcaatggcatatgctagggccaacactcctgcaccaatt |
12031545 |
T |
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| Q |
400 |
accaccgttattatgtgtgttgtagctgtccacacatttcctgttc |
445 |
Q |
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| T |
12031546 |
accaccgttattatgtgtgttgtagctgtccacacatttcctgttc |
12031591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 116; Significance: 8e-59; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 203 - 442
Target Start/End: Complemental strand, 241628 - 241389
Alignment:
| Q |
203 |
tacctaagtagaccttgacagcttgcatataagaataatttctcttgccattaactggatctggatacctatagcaatcagccacaagactgtaagtgaa |
302 |
Q |
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| T |
241628 |
tacctaagtagctcttgacagcttgcatgtaagtataatttctcttgccagtaactgggtctggatacctatagcaatcagctacaagactgtaagtgaa |
241529 |
T |
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| Q |
303 |
aacagaaatacatgaaaagatcaatatacttgcaataccagctatccatcctaatttggcaatggcatatgctagggctaacgctccttcaccaattacc |
402 |
Q |
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| T |
241528 |
agcagagatgcatgcaaagattattatactggctataccagctatccatcctagttgagccatggcccatgctagagccaacacccctgccccaactacc |
241429 |
T |
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| Q |
403 |
accgttattatgtgtgttgtagctgtccacacatttcctg |
442 |
Q |
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| T |
241428 |
actgttataatgtgtgttgttgctgtccacacatttcctg |
241389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 203 - 434
Target Start/End: Original strand, 223533 - 223764
Alignment:
| Q |
203 |
tacctaagtagaccttgacagcttgcatataagaataatttctcttgccattaactggatctggatacctatagcaatcagccacaagactgtaagtgaa |
302 |
Q |
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| T |
223533 |
tacctaagtagctcttgacagcttgcatgtaagtataatttcttttaccagtgattgggtctggaaacctatagcaatcagctacaagactgtaagtgaa |
223632 |
T |
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| Q |
303 |
aacagaaatacatgaaaagatcaatatacttgcaataccagctatccatcctaatttggcaatggcatatgctagggctaacgctccttcaccaattacc |
402 |
Q |
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| T |
223633 |
aatagagatggatgcaaaggttagtatactggctataccagctatccatcctagttgagccatagcccatgctagagccaacacccctgccccaactacc |
223732 |
T |
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| Q |
403 |
accgttattatgtgtgttgtagctgtccacac |
434 |
Q |
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| T |
223733 |
actgttatgatgtgtgttgttgccgtccacac |
223764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 300
Target Start/End: Complemental strand, 51528634 - 51528560
Alignment:
| Q |
226 |
tgcatataagaataatttctcttgccattaactggatctggatacctatagcaatcagccacaagactgtaagtg |
300 |
Q |
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| T |
51528634 |
tgcatataagtgtagtttctcttgccattaactgagtctggatatctataacaatcagctataagattgtaagtg |
51528560 |
T |
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